Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GCET2	Gene	0	29.35	46.81	22.79	22.34	6.91	4.40	12.16
2	383684	Transcript	0	1.79	5.64	1.37	1.28	0.43	0.46	0.69
3	308910	Transcript	0	4.65	8.41	4.19	4.59	1.26	1.22	2.61
4	ER1a	ExonRegion	0	0.13	0.34	0.04	0.07	0.04	0.00	0.04
5	I1	Intron	1	10.19	32.24	13.25	30.53	2.20	3.19	9.12
6	I1_SR1	SilentIntronRegion	1	10.79	34.94	14.49	32.78	2.54	3.62	10.09
7	I1_AR1	ActiveIntronRegion	0	6.37	15.01	5.30	16.14	0.00	0.36	2.84
8	E2_Aa	NovelBoundary	0	2.64	50.65	6.73	37.87	2.28	7.99	8.37
9	ER2a	ExonRegion	0	8.42	30.96	8.05	23.75	1.84	5.74	5.89
10	E2_Da	NovelBoundary	1	6.59	44.66	22.00	34.65	4.31	8.23	10.98
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.70
12	I2	Intron	0	16.73	35.76	19.62	29.01	3.18	5.13	10.77
13	I2_AR1	ActiveIntronRegion	0	16.75	35.79	19.64	29.03	3.18	5.14	10.78
14	E3_Aa	NovelBoundary	0	17.54	71.27	27.49	34.92	6.45	17.88	23.83
15	ER3a	ExonRegion	0	3.42	4.89	2.44	0.00	3.56	2.45	0.22
16	E3_Da	NovelBoundary	0	23.23	74.27	27.39	67.59	5.28	11.79	8.73
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.88	0.00	0.00	0.00	0.00
18	I3	Intron	0	40.69	52.61	33.12	44.93	4.06	8.22	14.43
19	I3_AR1	ActiveIntronRegion	0	43.13	55.46	35.17	48.25	4.36	8.69	15.13
20	I3_AR2	ActiveIntronRegion	0	11.68	18.86	8.91	5.39	0.50	2.62	6.26
21	E4_Aa	NovelBoundary	0	9.85	14.79	2.74	17.12	1.18	1.34	1.66
22	ER4a	ExonRegion	0	0.77	0.00	1.73	0.00	0.00	0.00	0.67
23	E4_Da	NovelBoundary	0	12.30	30.24	7.50	8.45	0.00	1.66	8.86
24	E4a_E5a	KnownJunction	0	0.00	0.00	0.80	0.00	0.00	0.00	0.83
25	I4	Intron	0	13.90	18.66	10.93	6.31	0.36	1.52	3.60
26	I4_SR1	SilentIntronRegion	0	13.92	18.71	10.95	6.33	0.36	1.53	3.61
27	E5_Aa	NovelBoundary	1	9.81	17.10	8.13	1.06	0.00	1.15	0.86
28	ER5a	ExonRegion	0	0.02	0.00	1.38	0.00	0.00	0.00	1.69
29	E5_Da	NovelBoundary	0	21.46	11.24	10.42	7.21	0.00	2.81	3.05
30	E5a_E6a	KnownJunction	0	0.00	0.00	0.86	0.00	0.00	0.00	2.61
31	I5	Intron	0	13.73	19.67	10.62	10.59	0.51	2.73	4.97
32	I5_SR1	SilentIntronRegion	0	13.75	19.70	10.64	10.60	0.51	2.74	4.98
33	ER6a	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	1.35
34	I6	Intron	0	14.16	29.01	9.12	11.33	3.03	2.84	5.86
35	I6_AR1	ActiveIntronRegion	0	22.32	52.57	14.41	20.13	6.23	4.81	9.99
36	E7_Aa	NovelBoundary	0	7.88	35.18	13.08	15.44	7.15	2.55	4.34
37	E7_Ab	NovelBoundary	1	9.85	42.59	10.45	2.90	0.95	0.00	10.03
38	ER7a	ExonRegion	0	3.46	10.93	2.71	2.49	0.81	0.92	1.35
39	ER7b	ExonRegion	0	22.41	74.28	26.75	38.12	10.89	9.33	23.23
40	E7_Da	KnownBoundary	0	26.70	61.32	26.05	36.90	11.20	8.71	18.73
41	ER7c	ExonRegion	0	33.90	48.21	25.04	22.13	7.23	4.00	12.16
42	IG50	Intergenic	0	36.75	52.11	22.71	22.92	6.08	4.53	10.91
43	IG50_AR4	ActiveIntergenicRegion	0	42.53	46.46	27.41	21.92	6.38	4.29	8.79
44	IG50_SR3	SilentIntergenicRegion	0	45.74	71.36	26.68	28.38	7.84	6.35	13.33
45	IG50_AR3	ActiveIntergenicRegion	0	52.33	79.84	31.92	41.40	10.89	10.57	17.32
46	IG50_SR2	SilentIntergenicRegion	0	27.89	38.74	18.89	19.26	3.67	2.62	10.68
47	IG50_SR1	SilentIntergenicRegion	0	22.06	34.76	13.42	14.96	4.55	2.46	8.09