Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLC9A10	Gene	0	1.37	2.37	2.65	2.00	0.81	0.68	1.48
2	393903	Transcript	0	0.00	0.30	0.12	0.00	0.00	0.00	0.16
3	393904	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	383683	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	305815	Transcript	0	3.02	3.01	3.78	2.03	0.21	0.59	1.95
6	IG2_AR4	ActiveIntergenicRegion	0	0.00	0.00	1.89	0.00	15.51	0.00	0.00
7	IG2_AR3	ActiveIntergenicRegion	0	0.45	0.00	2.32	0.99	18.36	1.44	0.00
8	ER1a	ExonRegion	0	0.00	0.00	1.24	0.00	0.73	0.00	0.31
9	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.63
10	ER2a	ExonRegion	0	0.00	0.00	0.02	0.54	1.11	0.00	0.22
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	4.31	0.00	0.73
12	E2a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	0.39	0.00	1.46	0.00	1.57	0.00	0.13
14	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
15	ER4a	ExonRegion	0	0.00	0.00	0.00	0.51	0.33	0.72	0.40
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	1.46	1.18	0.00	0.00
17	ER5a	ExonRegion	0	0.00	0.00	0.50	1.31	1.60	0.00	0.62
18	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	1.87	0.00	0.00
19	ER6a	ExonRegion	0	0.00	0.00	0.01	0.73	0.65	0.00	1.01
20	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
21	ER7a	ExonRegion	0	0.00	0.00	0.95	1.17	0.23	0.00	0.52
22	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67
23	ER8a	ExonRegion	0	0.00	0.00	1.83	0.92	0.78	0.00	0.39
24	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER9a	ExonRegion	0	0.00	0.00	0.72	0.00	0.00	0.00	0.36
27	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER10a	ExonRegion	0	0.00	0.00	1.16	2.68	0.00	0.00	0.28
29	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER11a	ExonRegion	0	0.00	1.08	0.00	0.00	0.00	0.00	0.61
31	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER12a	ExonRegion	0	0.00	0.01	1.75	2.27	1.40	3.19	0.61
33	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	1.08	1.39	0.00
34	ER13a	ExonRegion	0	0.00	0.00	0.93	0.00	3.66	0.20	0.75
35	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.60
36	ER14a	ExonRegion	0	0.00	2.81	0.57	1.93	0.54	1.90	0.08
37	E14a_E15a	KnownJunction	0	0.00	0.00	0.52	0.00	2.03	0.00	0.00
38	E15_Aa	NovelBoundary	0	2.05	16.76	3.22	2.52	0.92	1.58	4.03
39	ER15a	ExonRegion	0	0.49	3.04	1.26	2.36	0.94	0.00	0.43
40	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E16_Aa	NovelBoundary	0	1.95	3.84	3.05	1.22	0.00	0.00	8.70
42	ER16a	ExonRegion	0	0.60	4.69	4.34	3.40	0.42	0.94	2.87
43	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E17_Aa	NovelBoundary	0	2.62	12.58	7.53	11.46	0.00	1.02	2.11
45	ER17a	ExonRegion	0	6.18	4.47	7.47	7.55	0.22	1.50	1.94
46	E17_Da	NovelBoundary	0	4.66	10.67	6.55	2.28	0.00	2.81	3.27
47	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	I17	Intron	0	7.81	12.01	10.09	10.90	1.25	5.46	6.29
49	I17_SR1	SilentIntronRegion	0	7.82	12.03	10.10	10.91	1.25	5.47	6.30
50	E18_Aa	NovelBoundary	0	9.45	14.69	13.49	8.26	3.11	10.05	9.53
51	ER18a	ExonRegion	0	2.94	6.13	10.78	7.92	2.22	3.73	5.75
52	E18_Da	NovelBoundary	0	9.88	17.60	9.28	11.32	0.00	14.34	7.90
53	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	1.63	0.00	0.00	0.00
54	I18	Intron	0	5.41	11.76	6.62	9.31	0.75	3.58	4.47
55	I18_SR1	SilentIntronRegion	0	5.81	16.47	9.25	9.27	1.12	2.69	3.36
56	I18_AR1	ActiveIntronRegion	0	6.81	10.41	7.68	10.29	1.00	3.46	5.05
57	I18_SR2	SilentIntronRegion	0	4.35	10.27	4.66	8.75	0.40	4.12	4.69
58	E19_Aa	NovelBoundary	0	0.63	8.59	1.65	11.03	0.00	6.08	4.33
59	ER19a	ExonRegion	0	0.00	0.00	0.01	0.72	0.73	0.00	0.42
60	E19_Da	NovelBoundary	0	3.67	9.46	8.41	8.53	1.04	2.09	4.69
61	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
62	I19	Intron	0	2.92	11.29	4.78	7.85	0.47	3.44	4.08
63	I19_SR1	SilentIntronRegion	0	2.92	11.31	4.79	7.86	0.47	3.45	4.09
64	ER20a	ExonRegion	0	1.83	1.24	3.71	1.90	2.08	0.00	0.20
65	E20a_E21a	KnownJunction	0	0.00	0.00	0.89	0.00	1.18	0.00	0.00
66	ER21a	ExonRegion	0	0.00	0.76	0.97	0.00	0.82	0.00	1.66
67	E21a_E22a	KnownJunction	0	0.00	0.00	0.62	0.00	0.00	0.00	0.00
68	E21a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER22a	ExonRegion	0	0.57	0.00	1.48	0.00	0.42	0.00	2.02
70	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER23a	ExonRegion	0	0.68	1.60	1.52	1.11	0.00	0.00	1.48
72	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E24_Aa	NovelBoundary	0	6.64	15.00	5.20	7.26	0.00	1.66	4.63
74	ER24a	ExonRegion	0	1.77	9.06	2.57	3.08	0.91	0.71	2.33
75	E24_Da	NovelBoundary	0	1.77	16.16	5.19	2.93	1.08	1.47	5.03
76	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	1.38	0.00	0.00	0.00
77	ER25a	ExonRegion	0	3.54	7.92	4.70	2.40	1.34	2.50	3.06
78	E25_Da	NovelBoundary	0	2.20	4.78	2.44	4.14	2.10	0.00	7.58
79	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
80	I25	Intron	0	1.12	8.17	2.98	3.21	0.64	0.95	3.12
81	I25_SR1	SilentIntronRegion	0	1.07	8.59	2.91	3.27	0.61	0.94	3.11
82	E26_Aa	NovelBoundary	0	0.00	9.48	5.26	1.68	1.15	1.55	1.82
83	ER26a	ExonRegion	0	1.84	5.12	1.22	0.71	0.43	0.00	1.92
84	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	0.00
85	E26a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER27a	ExonRegion	0	0.00	0.00	0.06	0.05	1.30	0.00	0.05
87	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	I27_SR1	SilentIntronRegion	0	6.25	8.78	3.63	3.24	0.25	2.63	3.25
89	I27_AR2	ActiveIntronRegion	0	6.01	9.30	3.88	2.71	0.49	1.19	3.67
90	ER28a	ExonRegion	0	0.52	3.50	2.37	0.92	0.00	0.00	1.42
91	E28_Da	NovelBoundary	0	2.55	8.20	3.87	0.00	0.92	0.99	2.55
92	E28a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
93	ER29a	ExonRegion	0	0.00	1.21	0.49	0.00	0.00	0.00	0.66
94	ER30a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	ER31a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
96	I31	Intron	0	8.17	10.92	9.13	9.11	0.57	3.98	4.39
97	I31_SR1	SilentIntronRegion	0	8.18	10.92	9.13	9.12	0.57	3.98	4.40
98	E32_Aa	NovelBoundary	0	9.45	8.64	7.10	11.84	0.00	3.32	3.15
99	ER32a	ExonRegion	0	6.05	6.01	7.55	4.06	0.42	1.18	3.89
100	IG1	Intergenic	0	9.26	12.24	9.69	10.18	0.36	2.53	4.26
101	IG1_SR2	SilentIntergenicRegion	0	8.41	11.83	8.73	10.17	0.36	2.37	4.26
102	IG1_AR1	ActiveIntergenicRegion	0	14.88	10.35	14.51	9.00	0.27	2.20	3.65
103	IG1_SR1	SilentIntergenicRegion	0	9.44	15.01	10.80	10.93	0.41	3.38	4.60