Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 MYH15 Gene 0 0.19 0.22 0.32 0.40 0.11 0.37 2.02 2 273353 Transcript 0 0.19 0.18 0.24 0.37 0.06 0.35 1.80 3 IG28 Intergenic 0 2.57 3.02 2.11 2.16 15.33 1.39 3.56 4 IG28_AR10 ActiveIntergenicRegion 0 3.97 1.87 5.12 2.94 30.59 1.41 3.86 5 IG28_SR7 SilentIntergenicRegion 0 1.77 2.14 2.06 3.46 24.68 0.25 2.85 6 IG28_AR9 ActiveIntergenicRegion 0 3.77 1.69 2.11 3.07 18.09 2.15 4.73 7 IG28_AR8 ActiveIntergenicRegion 0 2.36 2.65 4.18 1.69 12.71 0.00 3.60 8 IG28_SR6 SilentIntergenicRegion 0 2.33 2.51 1.40 1.17 9.21 0.00 1.34 9 IG28_AR7 ActiveIntergenicRegion 0 4.34 4.38 2.79 2.28 24.61 1.41 4.53 10 IG28_AR6 ActiveIntergenicRegion 0 2.74 3.67 2.31 3.53 10.69 0.45 3.12 11 IG28_SR4 SilentIntergenicRegion 0 3.01 6.96 2.27 2.75 12.74 0.35 4.96 12 IG28_AR5 ActiveIntergenicRegion 0 3.91 4.76 3.33 1.99 14.68 1.85 7.22 13 IG28_SR3 SilentIntergenicRegion 0 3.89 7.49 2.42 4.88 47.80 2.62 13.02 14 IG28_AR2 ActiveIntergenicRegion 0 3.81 7.51 2.74 5.00 44.42 5.21 9.45 15 IG28_AR1 ActiveIntergenicRegion 0 2.85 1.87 3.41 3.30 30.05 2.71 5.57 16 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.64 17 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.72 18 ER2a ExonRegion 0 0.76 0.00 0.36 0.00 0.28 0.00 1.15 19 E2a_E3a KnownJunction 0 0.65 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 0.09 0.02 0.48 0.00 0.00 0.00 1.87 21 E3a_E4a KnownJunction 0 0.58 0.00 0.00 0.00 0.00 0.00 0.56 22 ER4a ExonRegion 0 0.38 2.24 0.00 0.00 0.29 0.00 0.91 23 E4a_E5a KnownJunction 0 0.00 1.63 0.00 0.00 0.00 0.00 1.45 24 ER5a ExonRegion 0 0.00 0.87 0.00 0.00 0.00 0.00 0.51 25 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.87 27 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.67 28 ER7a ExonRegion 0 0.00 0.94 0.00 0.00 0.00 0.00 0.78 29 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.64 30 ER8a ExonRegion 0 0.00 0.99 0.00 0.00 0.00 0.00 0.10 31 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.81 33 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.50 34 ER10a ExonRegion 0 0.00 0.00 0.32 0.56 0.00 0.00 1.06 35 E10a_E11a KnownJunction 0 0.00 0.00 0.53 1.68 0.00 0.00 0.00 36 ER11a ExonRegion 0 0.00 0.00 0.04 1.12 0.00 0.85 0.45 37 E11a_E12a KnownJunction 0 0.00 0.00 0.00 1.27 0.00 0.00 0.53 38 ER12a ExonRegion 0 0.00 0.00 0.61 0.14 0.00 0.78 0.03 39 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 3.16 0.00 40 ER13a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.71 0.40 41 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER14a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.60 0.74 43 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.59 44 ER15a ExonRegion 0 0.00 0.00 0.00 0.55 0.24 0.00 2.09 45 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.57 46 ER16a ExonRegion 0 0.00 0.52 0.00 0.54 0.23 0.00 3.76 47 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.72 48 ER17a ExonRegion 0 0.00 0.00 0.00 0.00 0.31 0.00 2.40 49 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.89 50 ER18a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.38 51 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.81 52 ER19a ExonRegion 0 1.06 0.00 0.19 0.00 0.46 0.00 1.90 53 E19a_E20a KnownJunction 0 1.03 0.00 0.80 0.00 0.00 0.00 0.89 54 ER20a ExonRegion 0 0.39 0.00 0.29 0.00 0.00 0.00 1.96 55 E20a_E21a KnownJunction 0 1.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER21a ExonRegion 0 0.93 0.00 0.42 0.00 0.00 0.00 2.33 57 E21a_E22a KnownJunction 0 0.97 0.00 0.00 0.00 0.00 0.00 3.22 58 ER22a ExonRegion 0 0.27 0.00 0.00 0.00 0.00 0.68 2.08 59 E22a_E23a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.52 60 ER23a ExonRegion 0 0.67 0.00 0.32 0.74 0.34 0.36 2.33 61 E23a_E24a KnownJunction 0 0.62 0.00 0.89 0.00 0.00 0.00 3.65 62 ER24a ExonRegion 0 0.02 0.00 0.30 0.00 0.48 0.00 3.68 63 E24a_E25a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 5.26 64 ER25a ExonRegion 0 0.00 0.00 0.28 0.00 0.23 0.57 5.13 65 E25a_E26a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 1.02 3.45 66 ER26a ExonRegion 0 0.00 0.00 0.35 0.00 0.00 0.58 2.45 67 E26a_E27a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER27a ExonRegion 0 0.00 0.47 0.36 0.00 0.00 0.00 1.95 69 E27a_E28a KnownJunction 0 0.00 1.63 0.89 0.00 0.00 0.00 0.85 70 ER28a ExonRegion 0 0.00 0.13 0.84 0.97 0.21 0.00 2.58 71 E28a_E29a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 5.07 72 ER29a ExonRegion 0 0.00 0.57 0.37 0.00 0.00 0.28 2.34 73 E29a_E30a KnownJunction 0 0.00 1.23 0.55 0.00 0.00 1.61 0.82 74 ER30a ExonRegion 0 0.49 0.94 0.04 0.00 0.00 0.47 1.51 75 E30a_E31a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.92 76 ER31a ExonRegion 0 0.00 0.85 0.39 0.71 0.21 0.95 3.66 77 E31a_E32a KnownJunction 0 0.00 1.18 0.89 1.68 0.00 0.00 4.97 78 ER32a ExonRegion 0 0.00 0.05 0.60 1.08 0.33 0.80 2.22 79 E32a_E33a KnownJunction 0 0.00 0.00 1.47 1.68 0.92 0.00 3.18 80 ER33a ExonRegion 0 0.78 0.00 1.27 1.38 0.06 0.94 2.81 81 E33a_E34a KnownJunction 0 0.00 0.00 1.25 1.52 0.00 4.98 1.62 82 ER34a ExonRegion 0 0.00 0.80 0.96 0.95 0.00 1.40 5.59 83 E34a_E35a KnownJunction 0 0.00 0.00 0.62 1.68 0.00 0.00 0.89 84 ER35a ExonRegion 0 0.00 0.00 0.20 1.73 0.00 1.80 3.55 85 E35a_E36a KnownJunction 0 0.00 0.00 0.89 0.00 0.00 1.37 2.79 86 ER36a ExonRegion 0 0.00 0.00 0.61 0.53 0.00 0.12 2.63 87 E36a_E37a KnownJunction 0 0.00 0.00 0.00 2.76 0.00 0.00 1.42 88 ER37a ExonRegion 0 0.21 0.00 0.41 2.34 0.00 0.41 1.16 89 E37a_E38a KnownJunction 0 1.03 0.00 0.00 1.54 0.00 1.66 4.39 90 ER38a ExonRegion 0 0.42 0.00 0.30 0.98 0.00 2.42 2.39 91 E38a_E39a KnownJunction 0 0.92 0.00 0.00 0.00 0.00 0.00 2.18 92 ER39a ExonRegion 0 0.56 0.00 0.00 0.00 0.00 0.00 2.15 93 E39a_E40a KnownJunction 0 0.90 0.00 0.00 0.00 0.00 0.00 1.78 94 ER40a ExonRegion 0 0.18 0.00 0.00 0.82 0.00 0.00 2.87 95 E40a_E41a KnownJunction 0 0.00 0.00 0.00 1.19 0.00 0.00 2.24 96 ER41a ExonRegion 0 0.87 0.00 0.38 0.82 0.00 0.00 2.29 97 E41a_E42a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.89 98 ER42a ExonRegion 0 0.21 0.23 0.35 0.00 0.03 0.16 1.06