Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PPM1M	Gene	0	8.84	7.85	9.92	6.69	13.41	25.26	11.72
2	296487	Transcript	0	0	0	0	0	0	0	0
3	323588	Transcript	0	4.65	6.11	6.61	7.30	2.28	6.58	3.87
4	409502	Transcript	0	1.62	0.00	1.60	1.42	0.00	2.46	0.00
5	ER1a	ExonRegion	0	0.86	0.55	0.54	0.00	2.21	1.59	0.67
6	E1_Ab	KnownBoundary	0	1.75	4.12	2.70	0.00	4.61	4.56	0.89
7	ER1b	ExonRegion	0	0.78	1.55	2.80	0.91	1.47	1.18	0.23
8	E1a_E2a	KnownJunction	0	0.00	0.00	1.35	0.00	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	4.87	1.42	4.51	2.36	0.99	8.42	1.68
10	ER2a	ExonRegion	0	8.00	7.90	6.96	6.06	8.51	21.31	6.13
11	E2_Da	NovelBoundary	0	9.90	4.70	4.71	7.23	1.06	3.32	0.70
12	E2a_E3a	KnownJunction	0	11.33	4.62	4.14	1.11	14.15	10.45	11.79
13	E2a_E4a	KnownJunction	0	2.09	0.00	3.20	2.84	0.00	2.47	0.00
14	ER3a	ExonRegion	0	11.78	4.78	5.05	4.74	11.95	24.06	12.65
15	E3a_E4a	KnownJunction	0	8.40	6.41	6.80	1.63	8.90	9.17	13.07
16	I3_SR1	SilentIntronRegion	0	10.48	4.03	5.31	3.19	0.43	2.34	3.54
17	E4_Aa	NovelBoundary	0	0.97	3.57	0.63	5.34	0.90	8.28	0.00
18	ER4a	ExonRegion	0	7.48	8.36	11.62	6.15	11.83	22.09	13.18
19	E4a_E5a	KnownJunction	0	7.51	6.02	9.54	6.04	12.56	23.05	16.72
20	ER5a	ExonRegion	0	9.13	12.33	8.38	5.15	12.84	12.91	14.21
21	E5_Da	NovelBoundary	0	0.00	2.76	3.51	10.38	1.01	6.32	1.40
22	E5a_E6a	KnownJunction	0	7.24	6.54	11.28	1.68	12.22	7.10	11.26
23	E6_Aa	NovelBoundary	0	2.32	13.37	3.79	5.96	0.92	4.77	0.69
24	ER6a	ExonRegion	0	6.37	9.63	7.16	5.42	14.75	20.79	14.67
25	E6_Da	NovelBoundary	0	1.84	7.70	0.78	4.52	0.00	4.21	0.69
26	E6a_E7a	KnownJunction	0	6.46	4.26	12.82	1.33	10.60	25.70	7.31
27	I6_AR1	ActiveIntronRegion	0	2.46	7.54	2.52	4.68	0.23	2.53	0.56
28	E7_Aa	NovelBoundary	0	8.06	6.96	6.98	11.19	0.95	5.44	5.88
29	ER7a	ExonRegion	0	7.16	4.86	9.67	1.19	13.41	29.67	10.66
30	E7_Da	NovelBoundary	1	5.47	9.17	10.32	9.02	1.13	11.42	1.55
31	E7a_E8a	KnownJunction	0	3.91	5.18	7.52	0.00	13.65	33.98	10.68
32	E8_Aa	NovelBoundary	0	2.72	7.22	4.63	3.44	0.00	8.07	3.63
33	ER8a	ExonRegion	0	6.78	7.42	12.20	3.30	15.06	33.99	15.18
34	E8_Da	NovelBoundary	0	3.55	5.81	0.85	4.61	1.04	17.15	3.30
35	E8a_E9a	KnownJunction	1	6.88	3.73	10.73	3.06	22.94	36.45	7.58
36	E9_Aa	NovelBoundary	1	4.34	1.00	6.14	7.37	1.18	18.33	2.62
37	ER9a	ExonRegion	0	12.16	7.78	14.97	7.99	23.38	43.70	14.52
38	E9_Da	KnownBoundary	0	9.41	1.47	5.78	8.29	0.00	5.87	3.18
39	E9a_E9b	KnownJunction	0	5.92	9.62	9.31	9.83	21.83	36.58	12.08
40	ER9b	ExonRegion	0	4.65	6.11	6.61	7.30	2.28	6.58	3.87
41	E9_Ab	KnownBoundary	0	8.01	13.08	12.59	7.37	2.93	5.57	3.60
42	ER9c	ExonRegion	0	14.15	17.54	15.79	13.25	25.25	39.89	21.36
43	E9_Db	KnownBoundary	0	11.37	19.91	9.53	12.95	10.83	35.88	12.87
44	ER9d	ExonRegion	0	10.75	8.54	12.91	8.19	17.57	33.76	14.28
45	ER9e	ExonRegion	0	1.15	0.00	0.00	0.00	0.00	2.45	0.00