Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAD54L2	Gene	0	32.19	88.11	53.53	95.57	46.38	47.11	59.90
2	409535	Transcript	0	13.08	52.90	24.05	47.41	15.72	26.62	21.46
3	296477	Transcript	0	0	0	0	0	0	0	0
4	IG42_SR8	SilentIntergenicRegion	0	12.14	11.36	6.99	5.53	2.46	6.78	4.49
5	IG42_AR9	ActiveIntergenicRegion	0	32.43	18.44	28.26	14.33	10.47	8.31	11.01
6	IG42_AR10	ActiveIntergenicRegion	0	25.39	16.17	27.68	11.78	6.54	4.08	9.69
7	ER1a	ExonRegion	1	5.36	12.49	15.10	14.45	5.05	6.98	2.59
8	E1_Da	NovelBoundary	0	11.20	15.68	5.79	6.10	4.50	2.14	5.19
9	E1a_E2a	KnownJunction	1	9.90	24.27	20.94	34.00	10.77	13.69	7.31
10	ER2a	ExonRegion	0	15.55	60.90	22.56	45.08	16.55	33.72	21.95
11	E2a_E3a	KnownJunction	0	17.27	77.11	28.67	69.76	25.96	35.64	39.63
12	ER3a	ExonRegion	0	17.32	89.72	32.98	73.73	20.25	43.05	35.82
13	E3_Ab	KnownBoundary	0	24.83	102.01	57.04	82.52	26.23	68.85	46.72
14	ER3b	ExonRegion	0	27.38	112.13	51.24	98.70	32.49	65.62	51.97
15	E3a_E4a	KnownJunction	0	25.52	101.96	45.21	95.17	37.41	61.64	44.90
16	ER4a	ExonRegion	0	22.71	99.43	52.88	99.30	31.40	54.18	52.39
17	E4a_E5a	KnownJunction	0	25.84	85.15	44.62	82.00	29.25	62.42	66.21
18	ER5a	ExonRegion	0	34.17	89.28	52.49	78.62	40.37	47.86	59.98
19	E5_Da	NovelBoundary	1	7.88	10.61	25.77	38.85	2.01	13.67	4.73
20	E5a_E6a	KnownJunction	0	34.77	62.58	39.94	73.23	50.39	28.68	60.21
21	I5	Intron	1	10.83	10.31	22.96	15.38	2.52	6.57	2.77
22	I5_SR1	SilentIntronRegion	1	10.90	10.38	23.12	15.47	2.54	6.61	2.79
23	E6_Aa	NovelBoundary	1	8.56	4.99	19.59	7.75	0.00	4.80	4.13
24	ER6a	ExonRegion	0	38.57	104.01	68.55	100.56	46.78	47.93	70.41
25	E6a_E7a	KnownJunction	0	21.20	89.19	55.38	80.38	37.44	36.47	48.66
26	ER7a	ExonRegion	0	24.83	83.77	50.72	76.69	39.27	27.34	43.74
27	E7a_E8a	KnownJunction	1	18.53	71.88	52.93	68.51	20.24	16.72	41.70
28	ER8a	ExonRegion	0	19.16	83.18	39.86	80.14	29.86	22.69	42.06
29	E8a_E9a	KnownJunction	0	24.58	86.25	43.48	94.09	27.80	30.26	43.42
30	ER9a	ExonRegion	0	26.92	94.31	54.23	96.60	38.02	29.65	52.35
31	E9a_E10a	KnownJunction	0	32.38	94.68	54.87	63.23	31.10	41.22	41.56
32	ER10a	ExonRegion	0	23.29	81.94	49.08	81.59	37.62	34.43	48.38
33	E10a_E11a	KnownJunction	0	15.54	95.76	35.16	87.83	30.55	48.56	41.60
34	ER11a	ExonRegion	0	17.94	88.84	43.22	86.52	37.17	42.17	51.82
35	E11a_E12a	KnownJunction	0	19.08	91.58	40.45	90.16	44.10	49.45	51.18
36	I11	Intron	0	6.19	12.54	14.01	10.95	4.01	4.81	6.70
37	I11_SR1	SilentIntronRegion	0	6.21	12.57	14.05	10.98	4.02	4.82	6.72
38	E12_Aa	NovelBoundary	0	4.22	22.17	12.56	35.79	3.18	8.23	8.87
39	ER12a	ExonRegion	0	32.50	97.96	59.98	118.10	49.28	45.57	59.54
40	E12a_E13a	KnownJunction	0	41.04	100.23	69.24	125.97	49.52	63.22	78.87
41	ER13a	ExonRegion	0	59.00	130.26	92.66	163.55	77.50	63.16	82.16
42	E13a_E14a	KnownJunction	0	56.98	154.16	98.24	171.05	74.16	63.19	95.13
43	ER14a	ExonRegion	0	45.47	131.28	81.04	148.77	69.44	72.80	87.01
44	E14a_E15a	KnownJunction	0	52.71	130.33	86.22	137.79	71.88	72.90	96.49
45	ER15a	ExonRegion	0	47.79	125.26	86.92	134.83	77.37	65.98	88.44
46	E15a_E16a	KnownJunction	0	27.49	88.06	63.22	134.56	51.36	55.82	64.48
47	E15a_E17a	NovelJunction	0	2.82	3.21	0.00	3.87	3.53	12.84	2.98
48	ER16a	ExonRegion	0	49.16	115.55	81.25	144.07	71.35	61.83	90.19
49	E16a_E17a	KnownJunction	0	71.32	140.24	90.71	155.72	88.66	77.00	94.39
50	ER17a	ExonRegion	0	86.20	153.91	109.54	160.49	102.47	86.17	122.41
51	E17a_E18a	KnownJunction	0	65.57	140.42	89.27	117.20	78.91	65.34	84.56
52	ER18a	ExonRegion	0	55.18	128.10	76.91	134.47	81.57	62.79	97.75
53	E18a_E19a	KnownJunction	0	34.51	75.48	44.39	106.58	41.50	47.97	71.89
54	ER19a	ExonRegion	0	38.35	94.25	61.31	116.87	71.62	67.51	94.42
55	E19a_E20a	KnownJunction	0	41.24	98.23	62.14	132.10	98.07	100.71	120.14
56	ER20a	ExonRegion	0	42.35	102.63	64.62	151.87	69.85	75.70	118.62
57	E20a_E21a	KnownJunction	0	36.13	86.77	64.26	118.63	84.74	70.56	100.79
58	ER21a	ExonRegion	0	35.41	92.92	60.16	119.00	63.91	69.06	95.49
59	E21a_E22a	KnownJunction	0	38.84	96.86	56.68	118.85	41.93	72.23	115.67
60	ER22a	ExonRegion	0	23.89	54.62	34.23	65.81	33.11	38.88	40.20
61	IG43	Intergenic	0	18.14	28.43	23.25	31.63	28.29	23.17	20.33
62	IG43_SR1	SilentIntergenicRegion	0	26.86	16.67	23.47	18.43	31.88	11.89	17.21
63	IG43_AR2	ActiveIntergenicRegion	0	49.51	47.69	54.71	49.21	40.41	38.61	30.03
64	IG43_SR2	SilentIntergenicRegion	0	24.59	33.32	36.97	34.74	30.31	21.89	25.35
65	IG43_AR3	ActiveIntergenicRegion	0	24.65	60.96	40.96	66.06	40.66	45.93	41.13
66	IG43_SR3	SilentIntergenicRegion	0	18.98	29.44	24.75	27.83	27.64	26.06	19.90
67	IG43_AR4	ActiveIntergenicRegion	0	21.45	36.48	29.11	45.04	44.64	32.41	26.00