Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLMAP	Gene	0	202.09	122.41	223.37	403.05	87.18	56.00	128.05
2	295951	Transcript	1	19.42	62.36	16.59	51.87	9.40	19.43	26.34
3	383719	Transcript	0	13.97	3.63	12.67	3.20	3.12	0.18	1.81
4	295952	Transcript	0	0	0	0	0	0	0	0
5	383718	Transcript	1	60.36	20.92	42.99	31.39	24.56	8.97	32.66
6	IG18_AR2	ActiveIntergenicRegion	0	13.40	8.56	9.37	12.64	1.78	5.75	1.11
7	IG18_AR3	ActiveIntergenicRegion	0	7.03	22.61	13.70	19.90	1.45	9.25	2.32
8	IG18_SR3	SilentIntergenicRegion	0	6.62	12.13	8.32	15.44	1.78	2.95	0.71
9	ER1a	ExonRegion	0	3.94	17.07	3.36	17.62	2.76	10.07	4.04
10	E1a_E2a	KnownJunction	1	19.68	88.93	9.81	60.87	9.29	13.27	39.81
11	ER2a	ExonRegion	1	47.15	142.21	46.43	112.76	15.85	50.72	52.75
12	E2_Ab	KnownBoundary	1	153.93	315.44	163.58	234.96	56.27	93.29	145.88
13	ER2b	ExonRegion	1	156.39	264.09	185.37	215.37	55.52	79.04	158.48
14	E2_Ac	KnownBoundary	1	154.78	232.95	210.55	187.88	83.08	73.91	167.25
15	ER2c	ExonRegion	1	133.82	230.68	187.03	193.21	66.37	70.65	183.99
16	E2_Ad	KnownBoundary	1	141.28	209.49	177.13	169.62	65.45	71.45	188.95
17	ER2d	ExonRegion	1	256.36	249.09	224.27	188.54	84.80	72.14	184.63
18	E2a_E3a	KnownJunction	1	354.21	256.65	292.84	189.91	97.63	75.33	180.22
19	ER3a	ExonRegion	1	301.50	241.10	281.00	203.18	89.05	64.20	184.51
20	E3a_E4a	KnownJunction	1	246.76	193.75	248.36	177.74	81.70	54.46	151.96
21	E3a_E11a	NovelJunction	1	0.00	9.41	0.00	0.00	0.00	1.66	0.00
22	ER4a	ExonRegion	1	219.90	205.09	246.53	180.43	92.13	59.03	193.67
23	E4a_E5a	KnownJunction	1	173.56	146.91	178.62	173.00	78.61	51.32	194.28
24	ER5a	ExonRegion	1	199.75	178.32	234.30	191.39	87.25	58.25	207.92
25	E5a_E6a	KnownJunction	1	163.01	150.98	194.10	151.11	90.02	42.83	135.12
26	ER6a	ExonRegion	1	196.95	173.49	227.84	183.18	101.06	51.51	184.37
27	E6a_E7a	KnownJunction	1	192.52	166.48	212.36	183.19	108.62	51.75	182.85
28	ER7a	ExonRegion	1	220.00	211.54	258.25	216.01	87.04	71.58	209.26
29	E7a_E8a	KnownJunction	1	219.86	244.85	250.70	257.26	74.16	77.40	175.06
30	ER8a	ExonRegion	1	268.28	246.85	300.65	243.90	89.32	82.74	202.83
31	E8a_E9a	KnownJunction	1	288.80	210.70	319.48	197.22	80.45	80.72	222.57
32	ER9a	ExonRegion	1	291.52	196.32	320.38	179.41	77.17	77.46	180.04
33	E9a_E10a	KnownJunction	1	356.51	151.01	329.10	144.23	98.25	51.48	136.98
34	ER10a	ExonRegion	1	424.72	212.83	387.19	203.74	90.73	64.28	184.27
35	E10a_E11a	KnownJunction	1	577.82	261.87	468.19	238.10	105.56	81.07	197.69
36	ER11a	ExonRegion	1	543.43	219.34	441.33	216.82	114.87	74.76	188.91
37	E11a_E12a	KnownJunction	0	280.29	131.20	253.84	153.34	90.11	30.71	121.16
38	E11a_E14a	KnownJunction	0	21.15	7.67	15.58	8.40	2.90	3.16	10.55
39	E11a_E15a	NovelJunction	1	44.46	46.37	50.57	46.52	17.36	19.32	33.48
40	ER12a	ExonRegion	0	199.49	82.54	174.18	102.01	68.46	18.97	95.00
41	E12a_E13a	KnownJunction	0	114.54	33.23	79.68	54.05	41.03	13.37	60.68
42	E12a_E14a	NovelJunction	0	52.64	25.30	50.35	18.26	28.10	18.01	25.55
43	E12a_E15a	NovelJunction	0	79.54	33.00	79.24	40.26	22.43	17.85	36.79
44	E12a_E15b	KnownJunction	0	7.04	1.31	7.95	0.00	1.98	0.00	0.00
45	ER13a	ExonRegion	0	81.14	28.20	53.33	46.21	27.04	11.66	46.16
46	E13a_E14a	NovelJunction	0	53.84	21.65	53.14	29.34	36.84	3.91	51.32
47	E13a_E15a	KnownJunction	0	18.91	13.48	11.67	14.74	9.15	8.31	18.57
48	ER14a	ExonRegion	0	55.82	26.24	50.70	35.67	28.49	8.00	41.47
49	E14a_E15a	KnownJunction	0	75.62	47.97	89.61	66.83	55.63	15.33	75.30
50	E15_Ab	NovelBoundary	1	47.48	11.03	74.80	76.29	3.48	11.82	11.42
51	ER15a	ExonRegion	0	120.64	63.98	143.49	255.21	69.92	28.20	122.44
52	ER15b	ExonRegion	1	170.68	85.89	261.82	694.95	97.33	35.10	164.74
53	E15_Da	KnownBoundary	0	20.40	10.59	24.34	15.12	3.53	1.29	2.44
54	E15a_E16a	KnownJunction	1	193.14	85.72	310.33	986.98	110.01	36.64	189.13
55	ER15c	ExonRegion	0	20.90	5.94	17.39	6.41	4.26	0.36	3.61
56	I15_AR3	ActiveIntronRegion	0	25.64	25.74	33.54	72.05	3.67	13.45	4.72
57	ER16a	ExonRegion	1	348.34	213.50	446.30	1252.18	128.20	84.55	259.45
58	E16a_E17a	KnownJunction	0	305.53	238.73	383.85	1503.85	110.63	104.73	236.07
59	ER17a	ExonRegion	1	256.11	207.62	387.12	1497.79	100.31	95.81	237.16
60	E17_Da	KnownBoundary	0	15.52	3.76	27.58	6.01	0.88	0.00	2.34
61	E17a_E18a	KnownJunction	1	235.56	184.16	386.26	1339.65	96.22	83.80	205.87
62	E17a_E19a	NovelJunction	1	2.75	20.70	12.33	145.02	0.00	20.50	0.00
63	ER17b	ExonRegion	0	26.83	8.75	27.28	10.58	21.01	2.55	5.23
64	E17_Db	NovelBoundary	0	42.79	40.30	46.01	55.16	13.28	45.13	19.10
65	ER18a	ExonRegion	1	314.91	192.38	448.97	1312.42	142.17	81.73	246.34
66	E18a_E19a	KnownJunction	1	244.62	185.40	388.21	1195.34	130.34	73.40	204.08
67	ER19a	ExonRegion	1	239.40	184.50	399.21	1258.70	129.38	96.30	225.75
68	E19a_E20a	KnownJunction	1	239.67	174.18	364.59	1255.86	154.41	83.00	212.32
69	E19a_E22a	NovelJunction	0	1.84	8.12	4.79	15.71	0.00	0.00	0.00
70	I19_AR2	ActiveIntronRegion	1	51.92	18.45	62.76	111.19	5.79	6.10	6.19
71	E20_Aa	NovelBoundary	1	53.66	41.25	56.78	166.85	8.71	9.22	3.75
72	ER20a	ExonRegion	1	218.33	225.80	371.18	1451.28	135.77	100.21	224.36
73	E20_Da	NovelBoundary	1	78.08	1.23	145.05	5.01	1.80	1.63	0.00
74	E20a_E21a	KnownJunction	1	198.26	236.47	355.65	1536.36	137.44	111.00	228.86
75	E20a_E22a	NovelJunction	1	0.00	1.21	1.65	25.14	0.00	0.00	0.00
76	ER21a	ExonRegion	1	307.21	229.91	452.03	1572.04	168.90	124.23	253.42
77	E21a_E22a	KnownJunction	1	351.57	229.22	486.02	1701.62	191.89	102.94	261.71
78	ER22a	ExonRegion	1	495.44	247.65	638.89	1723.21	243.67	131.08	292.83
79	E22_Da	NovelBoundary	1	41.09	99.07	130.74	639.59	6.36	23.74	11.38
80	E22a_E23a	KnownJunction	1	536.73	225.54	637.43	1522.76	246.83	127.51	304.97
81	I22	Intron	1	18.17	20.46	29.70	143.71	1.92	6.80	4.61
82	I22_AR1	ActiveIntronRegion	1	18.77	53.74	58.39	314.52	3.00	7.10	5.66
83	I22_SR1	SilentIntronRegion	1	44.04	57.22	87.02	460.50	2.23	19.03	10.81
84	I22_AR2	ActiveIntronRegion	1	24.28	45.71	51.99	321.94	2.62	17.68	6.30
85	ER23a	ExonRegion	0	314.57	172.08	342.70	1037.32	187.03	75.97	248.33
86	E23a_E24a	KnownJunction	1	110.14	68.99	21.96	316.18	13.28	11.44	105.64
87	I23_AR2	ActiveIntronRegion	0	55.22	38.92	82.85	166.16	78.86	22.97	37.24
88	I23_SR3	SilentIntronRegion	1	37.67	27.65	36.37	36.31	16.10	4.71	18.90
89	I23_AR3	ActiveIntronRegion	0	35.79	28.10	44.66	32.33	16.43	7.84	17.26
90	I23_SR4	SilentIntronRegion	0	41.23	21.90	36.95	37.07	17.36	5.78	17.75
91	ER24a	ExonRegion	0	336.03	107.68	352.34	533.92	159.40	82.43	179.69
92	ER24b	ExonRegion	0	6.92	1.21	6.77	16.21	9.72	3.68	8.77
93	IG19	Intergenic	0	7.96	2.38	10.00	14.01	2.14	1.99	3.06
94	IG19_AR1	ActiveIntergenicRegion	0	25.45	8.42	30.77	35.81	15.34	5.27	11.45
95	IG19_SR1	SilentIntergenicRegion	0	6.10	1.74	7.78	11.69	0.73	1.64	2.17