Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NGLY1	Gene	0	79.30	85.59	118.55	74.77	74.74	120.96	81.82
2	396649	Transcript	1	52.52	32.58	50.01	33.29	4.33	25.59	16.04
3	308710	Transcript	0	7.45	7.43	10.17	7.46	10.77	9.93	8.29
4	280700	Transcript	0	0	0	0	0	0	0	0
5	280699	Transcript	0	0.55	2.10	1.58	0.84	0.00	0.64	0.08
6	ER1a	ExonRegion	0	13.74	27.52	14.70	20.34	9.38	49.01	15.65
7	E1a_E2a	KnownJunction	0	60.62	69.67	50.24	73.20	13.46	160.99	47.91
8	ER2a	ExonRegion	0	101.67	102.22	118.34	81.76	68.18	155.85	92.30
9	E2a_E4a	KnownJunction	0	73.94	121.37	145.76	87.53	99.15	165.19	87.19
10	ER3a	ExonRegion	0	0.19	0.00	0.00	0.00	0.00	0.00	0.17
11	ER4a	ExonRegion	0	85.37	138.98	159.59	112.62	71.79	186.84	110.31
12	E4a_E5a	KnownJunction	0	68.93	93.05	122.16	83.44	79.16	126.47	86.93
13	ER5a	ExonRegion	0	100.81	101.05	169.76	93.21	94.05	132.60	94.12
14	E5a_E6a	KnownJunction	0	110.29	63.29	176.17	76.56	114.99	96.18	97.96
15	E5a_E7a	KnownJunction	0	0.90	4.20	3.16	1.68	0.00	1.29	0.00
16	E5a_E10a	NovelJunction	1	2.84	7.51	15.26	9.32	0.00	26.64	0.00
17	I5_AR2	ActiveIntronRegion	0	18.54	6.51	12.67	3.85	4.28	2.56	7.88
18	ER6a	ExonRegion	0	99.27	78.92	154.29	76.52	89.98	93.57	95.06
19	E6a_E7a	KnownJunction	0	58.55	67.41	98.52	64.07	88.15	63.06	69.09
20	E6a_E9a	NovelJunction	1	0.00	0.00	2.03	2.82	1.06	10.02	0.00
21	E6a_E10a	NovelJunction	0	3.81	4.44	3.31	9.08	0.00	7.24	0.00
22	ER7a	ExonRegion	0	53.44	74.78	94.66	54.89	93.50	64.80	87.42
23	E7a_E8a	KnownJunction	0	6.03	6.54	7.37	13.03	6.11	13.32	2.14
24	E7a_E9a	KnownJunction	0	35.33	50.18	69.31	49.20	98.18	47.54	77.42
25	E7a_E10a	NovelJunction	0	5.82	3.78	4.48	4.25	0.97	11.44	0.00
26	I7	Intron	0	23.13	8.42	18.38	4.53	5.12	5.66	8.56
27	I7_AR1	ActiveIntronRegion	0	23.18	8.44	18.41	4.54	5.13	5.67	8.58
28	E8_Aa	NovelBoundary	0	28.14	15.89	25.56	12.95	9.71	10.59	18.43
29	ER8a	ExonRegion	0	11.71	12.49	13.97	8.21	10.47	9.75	11.02
30	E8a_E9a	NovelJunction	0	3.87	8.22	8.13	11.13	0.97	13.99	0.69
31	E8a_E10a	KnownJunction	0	4.61	3.26	9.15	1.14	15.75	6.73	11.72
32	ER9a	ExonRegion	0	56.07	83.60	74.39	69.57	69.53	76.95	78.51
33	E9_Da	NovelBoundary	1	37.49	7.43	50.17	1.54	1.18	6.06	6.68
34	E9a_E10a	KnownJunction	0	71.48	104.22	103.70	76.78	103.99	104.97	91.48
35	ER10a	ExonRegion	0	110.54	131.12	155.32	110.15	122.10	145.87	113.11
36	E10a_E11a	KnownJunction	0	94.11	111.05	148.76	108.17	75.71	143.11	83.02
37	E10a_E12a	NovelJunction	1	34.21	31.39	19.79	23.57	6.55	29.00	17.11
38	ER11a	ExonRegion	0	98.93	93.33	153.37	89.24	92.25	129.13	85.80
39	E11a_E12a	KnownJunction	0	77.36	73.61	120.37	72.60	91.13	123.20	55.72
40	ER12a	ExonRegion	0	142.02	114.28	181.19	101.26	105.36	169.97	103.55
41	E12a_E13a	KnownJunction	0	103.16	80.52	131.72	84.50	132.18	163.77	83.45
42	E12a_E14a	KnownJunction	1	52.52	32.58	50.01	33.29	4.33	25.59	16.04
43	ER13a	ExonRegion	0	89.36	82.41	120.44	80.37	100.69	151.93	96.53
44	E13a_E14a	KnownJunction	0	62.54	93.58	86.31	85.04	99.08	156.00	84.96
45	ER14a	ExonRegion	0	71.19	73.93	110.15	67.41	67.22	144.64	79.91
46	IG40_AR6	ActiveIntergenicRegion	0	5.35	3.03	5.38	3.68	5.18	8.34	4.44
47	IG40_AR1	ActiveIntergenicRegion	0	15.23	21.91	9.40	25.15	18.59	21.51	5.54