Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	THRB	Gene	0	61.37	24.53	161.98	49.36	8.64	76.07	22.74
2	356447	Transcript	0	2.70	3.78	10.04	10.76	0.00	17.37	1.23
3	396671	Transcript	0	0.96	1.82	4.57	4.36	0.00	6.13	0.17
4	280696	Transcript	0	1.54	0.84	2.11	0.72	0.06	0.14	0.23
5	ER1a	ExonRegion	0	9.87	3.59	19.76	11.09	0.71	15.24	3.57
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2b	KnownJunction	0	2.70	3.78	10.04	10.76	0.00	17.37	1.23
8	I1_AR3	ActiveIntronRegion	1	2.84	3.36	6.65	3.55	0.33	0.74	8.42
9	I1_SR4	SilentIntronRegion	1	2.53	1.48	6.06	2.59	0.15	3.46	7.96
10	I1_AR6	ActiveIntronRegion	1	3.26	3.04	6.01	5.65	0.40	4.80	9.49
11	I1_SR5	SilentIntronRegion	1	3.56	3.47	6.40	4.53	0.55	2.68	9.89
12	I1_AR7	ActiveIntronRegion	1	2.40	4.32	3.52	2.33	0.61	3.43	8.19
13	I1_SR6	SilentIntronRegion	1	3.89	1.66	7.00	2.31	0.63	1.19	8.17
14	I1_AR8	ActiveIntronRegion	1	2.23	2.41	10.26	1.87	0.93	2.23	9.47
15	ER2a	ExonRegion	0	1.92	3.64	9.14	8.73	0.00	12.26	0.34
16	ER2b	ExonRegion	0	10.26	14.01	29.27	21.37	1.15	19.86	4.60
17	E2a_E3a	KnownJunction	0	14.07	31.03	42.87	25.41	0.00	18.44	8.74
18	I2_AR2	ActiveIntronRegion	0	11.98	5.03	28.07	7.91	2.10	20.11	7.27
19	ER3a	ExonRegion	0	30.85	36.60	84.15	45.69	3.82	57.43	16.43
20	E3a_E4a	KnownJunction	0	41.82	35.83	113.64	58.92	2.26	94.31	17.43
21	ER4a	ExonRegion	0	46.13	49.10	151.39	70.20	6.44	106.43	37.11
22	E4_Da	NovelBoundary	0	6.69	10.46	7.10	1.16	1.04	1.47	2.36
23	E4a_E6a	KnownJunction	0	44.88	38.70	130.54	55.29	10.97	76.22	36.49
24	ER5a	ExonRegion	0	3.07	1.69	4.23	1.44	0.13	0.28	0.47
25	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER6a	ExonRegion	0	43.88	37.94	134.97	67.92	6.86	72.18	36.48
27	E6a_E7a	KnownJunction	0	44.14	37.49	139.98	56.59	10.56	60.57	27.85
28	ER7a	ExonRegion	0	56.86	34.30	142.24	53.77	10.21	64.56	31.92
29	E7a_E8a	KnownJunction	0	65.29	33.23	144.84	55.86	4.61	62.60	34.71
30	ER8a	ExonRegion	0	69.35	40.72	142.94	53.95	8.26	69.67	25.95
31	E8a_E9a	KnownJunction	0	76.86	25.09	162.00	57.41	9.64	75.79	22.69
32	ER9a	ExonRegion	0	75.92	35.40	163.23	59.85	9.38	98.16	27.78
33	E9a_E10a	KnownJunction	0	79.56	36.25	169.00	62.99	8.14	101.46	25.94
34	ER10a	ExonRegion	0	55.49	39.14	131.38	57.12	9.02	71.32	28.44
35	E10a_E11a	KnownJunction	0	44.38	24.64	116.51	51.26	7.79	78.44	21.38
36	ER11a	ExonRegion	0	69.07	23.14	184.54	51.82	9.74	83.00	23.33
37	IG35_AR12	ActiveIntergenicRegion	0	8.26	1.72	21.05	3.01	0.33	7.41	1.09
38	IG35_AR11	ActiveIntergenicRegion	0	8.97	1.48	16.06	5.15	0.57	7.75	3.18
39	IG35_SR8	SilentIntergenicRegion	0	6.26	1.09	10.68	3.31	0.16	6.59	1.14
40	IG35_AR10	ActiveIntergenicRegion	0	9.24	0.87	9.67	3.40	0.00	3.03	0.66
41	IG35_AR9	ActiveIntergenicRegion	0	9.97	2.43	11.23	1.25	0.00	3.49	3.05
42	IG35_AR7	ActiveIntergenicRegion	0	3.83	0.89	6.73	6.79	0.00	10.17	0.42
43	IG35_AR3	ActiveIntergenicRegion	0	2.65	1.35	4.90	3.94	0.04	12.86	0.00
44	IG35_AR1	ActiveIntergenicRegion	0	224.67	147.01	87.46	105.98	81.06	273.89	36.20