Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ITPR1	Gene	0	11.23	6.59	43.20	56.30	10.61	18.84	14.40
2	354582	Transcript	0	0.77	0.46	3.22	5.46	0.61	1.99	2.11
3	357086	Transcript	0	5.57	3.59	23.91	44.20	5.86	8.23	11.87
4	302640	Transcript	1	1.52	5.67	13.42	49.41	2.31	8.39	1.38
5	356617	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	1.74	3.93	4.29	22.84	1.96	7.16	2.66
7	E1a_E2a	KnownJunction	0	2.75	5.39	11.53	40.80	3.34	10.96	4.72
8	ER2a	ExonRegion	0	2.01	6.89	19.36	41.74	3.04	20.45	5.70
9	E2a_E3a	KnownJunction	0	3.17	11.01	23.58	42.59	2.35	13.78	6.65
10	ER3a	ExonRegion	0	3.61	5.62	28.77	59.35	6.46	17.14	8.38
11	E3a_E4a	KnownJunction	1	0.00	8.04	25.74	48.82	3.07	16.75	7.29
12	ER4a	ExonRegion	1	3.41	7.24	31.75	57.17	5.59	17.80	9.91
13	E4a_E5a	KnownJunction	0	9.96	6.25	49.48	73.82	6.73	20.61	10.07
14	ER5a	ExonRegion	0	6.79	8.24	45.20	56.13	6.75	11.09	11.63
15	E5a_E6a	KnownJunction	1	9.83	11.06	43.24	55.56	7.88	7.13	8.73
16	ER6a	ExonRegion	0	9.63	15.40	48.07	53.89	7.31	20.11	9.02
17	E6a_E7a	KnownJunction	0	5.81	6.59	47.28	62.34	4.98	17.07	9.85
18	ER7a	ExonRegion	0	10.56	15.92	47.44	66.76	6.16	16.86	11.74
19	E7a_E8a	KnownJunction	0	11.10	20.20	42.95	67.43	5.26	23.16	11.41
20	ER8a	ExonRegion	0	8.08	12.16	42.18	77.58	8.06	17.09	13.57
21	E8a_E9a	KnownJunction	0	5.84	14.27	46.85	76.07	11.76	18.44	19.92
22	ER9a	ExonRegion	0	9.22	17.31	45.61	77.96	7.23	23.09	17.07
23	E9a_E10a	KnownJunction	0	8.96	10.80	34.65	60.68	5.16	16.24	7.37
24	ER10a	ExonRegion	0	4.50	9.59	29.69	53.77	5.83	15.55	12.35
25	E10a_E11a	KnownJunction	1	2.17	6.20	29.03	53.18	4.54	9.35	5.80
26	ER11a	ExonRegion	0	6.32	6.48	32.12	56.63	8.66	13.70	10.63
27	E11a_E12a	KnownJunction	0	4.84	0.00	16.70	21.02	7.35	4.90	11.81
28	E11a_E13a	KnownJunction	1	1.52	5.67	13.42	49.41	2.31	8.39	1.38
29	ER12a	ExonRegion	0	3.86	2.24	19.43	22.64	4.61	5.80	11.98
30	E12a_E13a	KnownJunction	0	2.00	2.97	16.50	19.99	1.18	2.95	8.91
31	ER13a	ExonRegion	0	9.04	11.34	44.98	74.20	10.72	16.60	15.59
32	E13a_E14a	KnownJunction	0	5.54	12.64	38.43	88.21	10.70	14.79	11.31
33	ER14a	ExonRegion	0	5.28	10.56	38.94	71.05	6.46	15.30	14.17
34	E14a_E15a	KnownJunction	1	4.77	6.09	51.66	57.22	6.50	22.00	13.97
35	ER15a	ExonRegion	0	7.36	6.93	40.92	65.44	7.37	15.48	11.90
36	E15a_E16a	KnownJunction	0	9.20	7.72	39.73	77.72	6.36	22.73	17.04
37	ER16a	ExonRegion	0	9.46	7.85	41.85	73.41	4.97	16.46	15.39
38	E16a_E17a	KnownJunction	0	7.91	6.99	44.25	81.25	7.61	18.01	15.28
39	ER17a	ExonRegion	0	4.79	7.30	36.53	80.38	4.83	16.19	13.81
40	E17a_E18a	KnownJunction	1	4.49	13.42	39.35	97.34	6.75	20.98	12.68
41	ER18a	ExonRegion	0	8.64	9.85	51.20	87.60	7.26	25.04	17.15
42	E18a_E19a	KnownJunction	0	5.59	5.33	43.53	70.73	4.50	20.53	12.35
43	ER19a	ExonRegion	0	10.44	10.16	52.25	75.29	8.54	18.31	16.05
44	E19a_E20a	KnownJunction	1	8.53	9.22	26.77	68.03	4.50	5.84	11.32
45	ER20a	ExonRegion	1	5.67	8.41	33.74	77.73	11.20	18.69	17.16
46	E20a_E21a	KnownJunction	1	8.66	4.62	37.84	87.10	8.64	8.60	20.72
47	ER21a	ExonRegion	1	4.91	3.29	31.84	82.38	8.83	18.45	15.55
48	E21a_E22a	KnownJunction	1	5.97	3.10	34.96	54.29	14.78	4.50	8.90
49	ER22a	ExonRegion	1	7.79	4.32	48.77	58.99	8.04	8.88	12.92
50	E22a_E23a	KnownJunction	1	9.30	7.15	55.04	82.03	8.58	11.07	15.69
51	ER23a	ExonRegion	1	11.93	8.30	52.29	76.74	10.25	11.94	18.36
52	E23_Da	NovelBoundary	1	3.61	2.73	11.48	32.62	1.06	1.05	7.15
53	E23a_E24a	KnownJunction	0	5.84	2.39	25.46	47.08	8.46	6.78	11.42
54	E23_Db	NovelBoundary	0	0.00	1.58	9.33	19.26	0.00	6.19	0.00
55	E23b_E24a	KnownJunction	1	2.65	0.00	10.69	12.90	0.85	0.00	2.78
56	ER23b	ExonRegion	1	4.13	0.49	9.58	17.41	0.81	0.54	5.30
57	ER24a	ExonRegion	0	8.96	5.23	35.03	53.41	10.98	8.35	11.86
58	E24a_E25a	KnownJunction	0	5.94	7.64	38.79	45.68	12.22	15.01	8.56
59	ER25a	ExonRegion	0	9.76	3.63	36.15	52.60	9.30	14.54	13.41
60	E25a_E26a	KnownJunction	0	4.41	3.65	30.42	60.39	7.42	14.63	7.78
61	ER26a	ExonRegion	0	6.05	2.76	28.50	52.06	7.67	11.57	11.39
62	E26a_E27a	KnownJunction	0	5.91	1.63	22.06	39.23	6.02	6.94	14.15
63	ER27a	ExonRegion	0	5.64	3.30	24.50	50.95	6.74	11.09	16.04
64	E27a_E28a	KnownJunction	0	3.94	8.30	28.84	56.16	5.33	11.74	12.73
65	ER28a	ExonRegion	1	2.59	7.05	24.40	48.92	4.70	10.35	14.55
66	E28a_E29a	KnownJunction	1	2.27	4.33	18.15	51.07	2.77	6.91	7.24
67	ER29a	ExonRegion	1	4.61	4.14	18.88	41.74	7.45	5.31	9.25
68	E29a_E30a	KnownJunction	1	7.59	1.58	25.84	35.87	11.02	3.81	12.12
69	ER30a	ExonRegion	1	9.66	1.80	30.78	49.91	8.89	6.57	12.54
70	E30a_E31a	KnownJunction	0	7.13	1.37	42.21	54.43	6.87	12.49	17.74
71	ER31a	ExonRegion	1	14.75	2.76	52.65	62.42	16.74	9.23	19.89
72	E31a_E32a	KnownJunction	0	12.47	4.36	44.53	56.62	11.87	9.94	15.31
73	ER32a	ExonRegion	0	8.95	2.03	50.12	53.95	12.02	9.43	13.20
74	E32a_E33a	KnownJunction	0	8.90	2.55	43.46	57.46	18.51	12.73	15.72
75	ER33a	ExonRegion	0	7.43	2.16	39.22	54.99	13.64	11.08	16.31
76	E33a_E34a	KnownJunction	0	6.06	4.12	50.51	56.97	19.53	8.95	12.67
77	ER34a	ExonRegion	0	8.80	2.16	57.19	59.49	15.57	13.38	20.90
78	E34a_E35a	KnownJunction	0	12.27	4.81	54.55	65.37	18.93	12.27	16.15
79	ER35a	ExonRegion	0	7.51	8.18	52.41	62.27	14.36	13.99	18.87
80	E35_Da	NovelBoundary	0	0.00	1.00	0.00	0.00	0.00	8.82	0.00
81	E35a_E36a	KnownJunction	1	4.44	5.39	41.76	69.00	6.22	16.13	18.19
82	ER36a	ExonRegion	0	8.29	8.82	41.97	69.69	13.47	19.71	16.73
83	E36a_E37a	KnownJunction	0	5.51	8.72	28.09	54.18	15.21	21.41	12.94
84	ER37a	ExonRegion	0	6.20	6.78	31.81	48.74	9.32	14.46	10.36
85	E37a_E38a	KnownJunction	1	4.81	6.46	35.91	46.30	8.44	7.16	5.20
86	ER38a	ExonRegion	0	3.23	3.51	27.27	40.90	6.32	6.99	7.50
87	E38a_E39a	KnownJunction	1	2.39	1.52	23.11	26.36	7.26	7.24	3.25
88	ER39a	ExonRegion	0	4.65	3.07	33.43	40.08	6.23	10.21	9.77
89	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	0.00	0.00
90	E39a_E43b	KnownJunction	0	5.31	4.78	22.35	41.31	3.25	9.67	12.33
91	ER40a	ExonRegion	0	0.00	0.00	0.00	1.21	0.00	0.04	0.00
92	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
93	I40_SR2	SilentIntronRegion	0	0.80	6.00	1.18	4.97	0.50	9.46	0.72
94	E41_Aa	NovelBoundary	0	0.00	0.00	0.00	4.01	0.00	9.78	0.00
95	ER41a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
96	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
97	E41a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
98	I41	Intron	0	0.35	2.61	0.80	4.83	0.20	12.65	0.42
99	I41_SR1	SilentIntronRegion	0	0.02	2.47	0.81	3.50	0.16	8.87	0.31
100	I41_AR1	ActiveIntronRegion	0	0.57	2.72	0.80	5.76	0.23	15.26	0.49
101	E42_Aa	NovelBoundary	1	0.00	4.23	2.17	2.52	0.00	21.06	0.86
102	ER42a	ExonRegion	0	0.00	0.00	1.23	0.00	0.00	0.00	0.59
103	E42_Da	NovelBoundary	1	1.87	8.30	2.00	7.07	0.00	22.43	0.89
104	E42a_E43b	KnownJunction	0	0.00	0.00	2.47	0.00	0.00	0.00	0.89
105	I42	Intron	1	0.69	3.19	0.95	3.97	0.33	14.30	0.41
106	I42_AR1	ActiveIntronRegion	1	1.33	5.66	1.31	4.68	0.35	24.62	0.22
107	I42_AR2	ActiveIntronRegion	1	1.54	1.30	1.08	0.82	0.29	11.98	0.00
108	I42_SR1	SilentIntronRegion	0	0.28	2.47	1.40	4.23	0.43	14.33	0.27
109	I42_AR3	ActiveIntronRegion	0	1.22	1.59	1.23	1.73	0.27	8.65	0.00
110	I42_SR2	SilentIntronRegion	0	0.74	3.67	0.63	4.26	0.30	14.41	0.59
111	ER43a	ExonRegion	0	1.54	0.91	6.44	10.91	1.21	3.98	4.22
112	ER43b	ExonRegion	0	4.49	3.80	26.70	40.50	6.52	17.96	10.52
113	E43a_E44a	KnownJunction	0	2.95	8.85	18.05	33.35	2.24	18.36	5.47
114	I43	Intron	0	0.50	2.52	0.56	3.05	0.13	7.97	0.13
115	I43_SR1	SilentIntronRegion	0	0.51	2.52	0.57	3.06	0.13	7.99	0.13
116	E44_Aa	NovelBoundary	1	0.68	7.99	0.85	4.66	0.00	31.89	0.00
117	ER44a	ExonRegion	0	5.77	14.12	27.56	45.48	9.17	39.27	11.66
118	E44_Da	NovelBoundary	0	0.00	10.51	0.72	15.28	0.00	19.59	0.00
119	E44a_E45a	KnownJunction	0	4.17	8.56	35.52	49.47	9.41	20.82	9.13
120	I44_AR1	ActiveIntronRegion	0	2.33	4.07	2.28	4.57	0.17	10.81	0.21
121	I44_AR2	ActiveIntronRegion	0	1.26	1.41	2.06	3.04	0.00	9.66	0.25
122	I44_SR1	SilentIntronRegion	1	2.46	8.59	1.48	6.92	0.00	21.76	0.29
123	I44_AR3	ActiveIntronRegion	1	5.90	14.74	3.81	14.35	0.25	45.06	0.88
124	I44_AR4	ActiveIntronRegion	1	8.94	54.47	3.97	98.42	0.19	215.22	1.41
125	I44_SR3	SilentIntronRegion	0	6.91	30.53	3.07	42.69	0.26	82.52	0.29
126	I44_AR5	ActiveIntronRegion	1	3.69	20.60	0.67	11.68	0.46	29.94	0.43
127	I44_SR4	SilentIntronRegion	0	4.84	24.28	1.68	27.18	0.16	43.34	0.39
128	I44_AR8	ActiveIntronRegion	0	7.87	31.19	3.57	40.94	0.16	58.83	0.20
129	I44_SR5	SilentIntronRegion	0	7.08	28.59	1.10	30.16	0.23	58.97	0.29
130	I44_AR9	ActiveIntronRegion	0	3.89	23.84	0.66	21.58	0.19	44.36	0.00
131	I44_AR10	ActiveIntronRegion	1	11.25	64.41	4.19	79.87	0.56	133.75	0.70
132	I44_SR6	SilentIntronRegion	1	11.18	58.49	3.35	36.76	0.00	69.80	0.34
133	I44_AR11	ActiveIntronRegion	0	8.98	43.88	5.04	41.74	0.41	61.62	0.75
134	I44_SR7	SilentIntronRegion	0	2.25	11.65	2.74	11.65	0.00	14.42	0.00
135	I44_AR12	ActiveIntronRegion	0	5.68	29.40	3.91	29.87	0.04	56.66	0.14
136	ER45a	ExonRegion	0	9.80	8.91	39.97	53.45	8.09	24.43	14.16
137	E45a_E46a	KnownJunction	1	3.82	9.56	45.65	71.44	18.35	12.78	12.78
138	ER46a	ExonRegion	0	7.36	10.00	31.97	54.92	6.99	13.92	13.08
139	E46a_E47a	KnownJunction	0	15.76	9.25	47.72	66.56	11.60	16.86	21.33
140	E47_Aa	NovelBoundary	1	9.00	0.00	21.22	0.00	0.00	0.00	0.00
141	ER47a	ExonRegion	0	18.97	6.03	56.10	73.24	14.99	16.05	20.23
142	E47a_E48a	KnownJunction	0	14.72	5.91	62.71	76.45	16.00	21.68	28.02
143	E47a_E49a	NovelJunction	0	6.71	1.63	10.22	10.46	0.00	2.60	0.00
144	ER48a	ExonRegion	0	18.52	9.68	52.57	51.93	17.01	21.01	19.96
145	E48a_E49a	KnownJunction	0	18.19	12.85	46.79	64.91	21.05	26.02	23.59
146	ER49a	ExonRegion	0	19.23	12.95	56.85	68.58	16.36	25.63	24.30
147	E49a_E50a	KnownJunction	0	20.55	17.42	57.94	66.83	25.75	13.56	20.24
148	ER50a	ExonRegion	0	20.15	12.64	54.42	68.82	17.43	15.31	18.55
149	E50a_E51a	KnownJunction	0	21.81	8.77	47.18	60.28	20.26	13.13	14.58
150	ER51a	ExonRegion	0	15.85	12.14	51.66	74.33	13.95	18.32	18.52
151	E51a_E52a	KnownJunction	0	11.53	4.41	53.89	70.41	21.14	15.62	20.90
152	ER52a	ExonRegion	0	14.90	7.30	65.18	63.19	16.27	24.67	20.84
153	E52a_E53a	KnownJunction	0	16.69	3.65	62.07	44.75	14.73	13.13	22.43
154	ER53a	ExonRegion	0	16.01	4.93	56.64	37.72	13.99	16.97	17.38
155	E53a_E54a	KnownJunction	1	3.52	6.07	37.03	42.86	6.02	7.66	14.06
156	ER54a	ExonRegion	0	14.80	5.05	44.12	38.95	13.79	10.75	16.20
157	E54a_E55a	KnownJunction	0	12.30	3.89	44.48	38.63	6.94	12.25	12.17
158	ER55a	ExonRegion	0	15.04	4.00	52.05	42.98	9.16	16.14	17.47
159	E55a_E56a	KnownJunction	0	14.70	1.58	67.90	48.47	4.01	17.31	14.12
160	ER56a	ExonRegion	0	11.61	7.31	52.93	52.51	10.27	19.60	16.10
161	E56a_E57a	KnownJunction	0	9.96	9.12	35.32	58.65	13.58	15.49	12.31
162	ER57a	ExonRegion	0	9.21	4.81	36.71	42.88	11.65	17.51	13.25
163	E57a_E58a	KnownJunction	0	6.83	4.36	42.39	49.20	12.19	12.41	10.99
164	ER58a	ExonRegion	0	14.16	6.67	46.77	48.42	12.05	18.04	12.65
165	E58a_E59a	KnownJunction	0	14.14	2.71	41.29	65.70	14.82	25.70	12.83
166	E59_Aa	NovelBoundary	1	0.62	0.00	0.00	0.00	0.00	12.27	0.00
167	ER59a	ExonRegion	1	36.51	9.19	72.43	89.81	23.20	52.96	21.67
168	E59a_E60a	KnownJunction	0	28.57	9.12	52.90	106.28	10.33	57.46	30.33
169	ER60a	ExonRegion	0	33.00	10.04	54.25	76.03	22.30	41.25	23.90
170	E60a_E61a	KnownJunction	0	25.72	14.00	49.95	52.64	28.84	47.36	21.96
171	ER61a	ExonRegion	0	17.26	9.29	50.47	60.02	16.39	51.49	19.67
172	E61a_E62a	KnownJunction	0	17.71	3.42	59.35	51.26	14.80	31.46	13.61
173	ER62a	ExonRegion	0	19.03	3.86	59.00	46.06	13.90	27.84	13.85