Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C3orf32	Gene	0	3.76	3.12	18.04	26.10	1.08	3.36	0.39
2	317371	Transcript	0	3.43	2.27	5.98	5.29	0.23	1.49	0.02
3	341795	Transcript	0	0.01	0.00	0.01	0.01	0.00	0.00	0.00
4	ER1a	ExonRegion	0	23.33	8.67	5.55	0.81	1.96	1.32	0.28
5	E1_Da	NovelBoundary	0	6.11	3.76	10.63	5.42	0.85	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	14.03	15.11	3.20	1.52	0.21	3.23	0.00
8	E2a_E3a	KnownJunction	0	0.88	0.00	0.00	0.00	0.00	1.34	0.00
9	E3_Aa	NovelBoundary	0	9.58	2.71	3.97	4.01	2.88	3.24	4.27
10	ER3a	ExonRegion	0	6.37	7.09	2.58	2.74	0.68	1.35	0.00
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER4a	ExonRegion	0	0.00	0.00	3.14	7.04	0.29	3.28	0.00
13	E4a_E5a	KnownJunction	0	0.00	0.00	2.33	2.95	0.00	0.00	0.00
14	E5_Aa	NovelBoundary	0	36.12	26.11	7.76	4.44	0.99	0.00	0.00
15	ER5a	ExonRegion	0	5.10	6.31	6.91	2.03	0.26	0.12	0.00
16	E5_Da	NovelBoundary	0	48.48	40.35	12.86	4.28	36.93	8.36	6.82
17	E5a_E6a	KnownJunction	0	0.00	0.00	1.41	0.00	0.00	0.00	0.00
18	I5_AR1	ActiveIntronRegion	0	1.42	0.85	14.88	5.21	0.00	1.73	0.00
19	E6_Aa	NovelBoundary	0	1.03	0.00	18.32	23.08	0.00	1.58	0.00
20	ER6a	ExonRegion	0	1.37	0.00	11.65	6.32	0.00	6.13	0.00
21	E6a_E7a	KnownJunction	0	3.10	0.00	18.38	14.52	0.00	5.90	0.00
22	I6_AR1	ActiveIntronRegion	0	0.37	1.11	10.61	11.53	0.13	0.30	0.00
23	ER7a	ExonRegion	0	1.68	0.00	21.00	15.59	0.00	0.90	0.00
24	E7a_E9a	KnownJunction	0	0.60	0.00	2.23	4.61	0.00	0.00	0.00
25	E7a_E10a	NovelJunction	0	0.00	0.00	12.42	9.35	0.00	0.00	0.00
26	ER8a	ExonRegion	0	0.01	0.00	0.01	0.02	0.00	0.00	0.00
27	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E9_Aa	NovelBoundary	0	0.00	0.00	10.58	4.74	0.00	0.00	0.89
29	ER9a	ExonRegion	0	0.51	1.50	7.21	16.74	0.00	0.76	0.00
30	E9a_E10a	KnownJunction	0	0.00	0.00	4.74	8.34	0.00	0.00	0.00
31	ER10a	ExonRegion	0	1.05	0.94	28.33	13.28	1.09	2.07	0.00
32	E10a_E11a	KnownJunction	0	0.73	0.00	37.38	22.16	2.14	1.23	0.00
33	E11_Aa	NovelBoundary	0	0.00	0.00	2.17	20.16	0.00	1.66	0.00
34	ER11a	ExonRegion	0	0.12	0.00	25.51	27.63	1.20	1.90	0.00
35	E11a_E12a	KnownJunction	0	0.00	0.00	8.90	17.15	0.00	1.07	0.00
36	E12_Aa	NovelBoundary	0	2.00	1.13	15.35	24.79	0.00	1.37	0.00
37	ER12a	ExonRegion	0	0.21	0.33	19.08	33.74	0.82	3.27	0.07
38	E12a_E13a	KnownJunction	0	0.00	0.00	22.86	33.57	1.18	5.12	0.85
39	ER13a	ExonRegion	0	0.00	0.00	24.56	31.83	2.00	5.51	0.74
40	E13a_E14a	KnownJunction	0	0.00	0.00	24.76	33.70	2.01	3.06	0.72
41	ER14a	ExonRegion	0	0.51	2.03	23.21	38.89	1.72	3.58	0.66
42	E14a_E15a	KnownJunction	0	1.03	2.78	22.71	25.17	1.06	0.00	0.54
43	E14a_E17a	NovelJunction	0	0.00	0.00	1.62	15.39	0.00	1.02	0.00
44	ER15a	ExonRegion	0	0.54	1.87	14.58	19.46	0.63	2.16	0.65
45	E15a_E16a	KnownJunction	0	0.00	0.00	11.30	10.35	1.11	3.14	0.70
46	ER16a	ExonRegion	0	0.24	1.00	9.64	28.16	0.66	1.98	0.14
47	E16_Da	NovelBoundary	0	0.00	0.00	0.66	9.92	0.00	0.00	0.00
48	E16a_E17a	KnownJunction	0	0.93	0.00	9.76	40.53	2.35	5.92	0.00
49	ER17a	ExonRegion	0	1.67	0.21	27.29	44.58	1.58	6.57	0.38
50	E17a_E18a	KnownJunction	0	0.00	1.23	27.30	43.91	1.08	4.29	1.58
51	E17a_E19a	NovelJunction	0	0.00	1.10	3.66	10.92	0.00	9.14	0.00
52	ER18a	ExonRegion	0	2.05	1.47	32.76	42.68	1.89	5.37	0.64
53	E18a_E19a	KnownJunction	0	2.40	3.26	34.17	43.43	4.26	5.15	0.00
54	ER19a	ExonRegion	0	1.06	2.13	30.41	51.95	1.75	5.89	1.37
55	E19_Da	NovelBoundary	0	0.00	1.58	3.82	16.17	0.00	0.00	0.00
56	E19a_E20a	KnownJunction	0	0.00	4.36	21.30	38.23	3.25	7.48	0.00
57	I19_AR1	ActiveIntronRegion	0	0.00	0.00	1.73	8.55	0.42	0.00	0.00
58	ER20a	ExonRegion	0	1.93	3.03	37.72	64.35	2.19	6.96	1.34
59	E20_Da	KnownBoundary	0	2.05	0.00	31.33	33.13	1.18	5.68	0.00
60	ER20b	ExonRegion	0	1.41	0.00	11.25	6.75	0.58	0.99	0.00
61	IG26	Intergenic	0	5.47	3.42	1.23	2.16	0.75	8.53	0.09
62	IG26_AR10	ActiveIntergenicRegion	0	0.73	0.58	6.76	13.03	0.00	1.76	0.32
63	IG26_AR4	ActiveIntergenicRegion	0	4.65	5.62	0.43	3.15	0.79	14.94	0.00
64	IG26_SR3	SilentIntergenicRegion	0	5.27	5.20	0.80	2.67	0.37	12.22	0.27
65	IG26_AR3	ActiveIntergenicRegion	0	4.91	2.97	0.61	0.61	0.40	19.69	0.00
66	IG26_AR2	ActiveIntergenicRegion	0	29.42	11.85	7.75	8.44	5.84	37.08	0.27
67	IG26_SR1	SilentIntergenicRegion	0	23.85	12.60	1.75	4.01	2.64	23.24	0.37
68	IG26_AR1	ActiveIntergenicRegion	0	31.04	15.65	2.01	3.98	1.72	26.65	0.00