Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CAPN10	Gene	0	12.50	22.45	14.63	23.13	25.60	14.09	13.35
2	270361	Transcript	0	0.38	0.00	0.00	0.00	0.06	0.00	0.00
3	391982	Transcript	1	9.33	14.97	9.93	11.51	13.32	4.44	1.85
4	391984	Transcript	0	0	0	0	0	0	0	0
5	352879	Transcript	0	0.00	0.00	0.00	2.82	0.00	1.63	0.89
6	357048	Transcript	0	5.51	4.12	8.77	8.80	5.35	6.08	2.67
7	354082	Transcript	0	0	0	0	0	0	0	0
8	391983	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	270364	Transcript	0	0.16	1.23	0.96	1.31	0.00	1.11	0.47
10	404753	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.12	0.00	0.00
12	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.00	0.00
13	ER1c	ExonRegion	0	0.00	0.00	0.00	0.31	0.81	0.00	0.00
14	ER1d	ExonRegion	0	1.54	7.91	2.77	9.43	6.86	4.64	2.90
15	E1a_E2a	KnownJunction	0	6.61	19.49	12.00	25.79	32.34	15.68	10.72
16	E1a_E11a	KnownJunction	0	0.00	0.00	0.00	2.82	0.00	1.63	0.89
17	ER2a	ExonRegion	0	8.42	22.17	16.42	27.42	22.19	18.86	12.86
18	E2a_E3a	KnownJunction	0	9.58	31.39	22.16	27.20	23.05	14.34	18.90
19	E2a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I2	Intron	0	0.70	1.49	1.49	0.00	8.83	0.32	1.13
21	I2_SR1	SilentIntronRegion	0	1.41	3.07	4.17	0.00	16.61	0.00	2.21
22	I2_AR2	ActiveIntronRegion	0	1.45	3.34	3.53	0.00	13.73	0.90	2.29
23	I2_SR2	SilentIntronRegion	0	0.13	0.86	0.71	0.00	7.85	0.00	0.68
24	E3_Aa	NovelBoundary	0	0.98	1.50	0.65	1.44	11.76	0.00	0.64
25	ER3a	ExonRegion	0	16.68	35.34	21.44	30.66	37.48	22.05	21.59
26	E3_Da	NovelBoundary	0	3.30	0.00	2.63	1.08	12.52	0.00	4.06
27	E3a_E4a	KnownJunction	0	16.56	38.86	25.32	24.27	24.39	27.82	19.82
28	I3	Intron	0	2.17	0.90	3.39	2.36	11.16	0.40	3.16
29	I3_AR1	ActiveIntronRegion	0	1.83	1.13	2.28	2.40	9.06	0.56	3.28
30	I3_SR1	SilentIntronRegion	0	3.07	0.51	4.31	2.62	11.63	1.46	4.95
31	I3_AR2	ActiveIntronRegion	0	2.31	0.77	4.28	2.27	13.14	0.03	2.67
32	E4_Aa	NovelBoundary	0	0.00	1.60	0.68	0.00	9.66	0.00	1.53
33	ER4a	ExonRegion	0	16.68	32.81	19.15	34.74	35.14	20.29	20.58
34	E4a_E5a	KnownJunction	0	17.82	22.80	20.26	21.78	26.70	10.85	19.69
35	I4	Intron	0	1.29	1.77	2.16	1.68	10.83	0.86	3.08
36	I4_AR1	ActiveIntronRegion	0	1.37	2.37	2.46	2.24	13.61	1.65	3.53
37	I4_AR2	ActiveIntronRegion	0	0.91	1.10	2.48	1.87	11.22	0.35	3.47
38	ER5a	ExonRegion	0	16.85	33.06	18.54	24.15	35.54	14.99	15.79
39	E5a_E6a	KnownJunction	0	11.78	34.73	17.50	24.33	30.06	11.15	22.80
40	ER6a	ExonRegion	0	21.84	46.67	21.98	30.06	33.17	17.60	26.20
41	E6a_E7a	KnownJunction	0	16.82	34.68	13.82	34.51	29.51	23.64	19.73
42	ER7a	ExonRegion	0	21.40	30.44	22.94	31.26	41.32	21.05	21.95
43	E7_Da	NovelBoundary	0	1.03	0.00	3.08	1.60	10.37	0.99	5.65
44	E7a_E8a	KnownJunction	1	12.23	19.41	12.73	14.44	9.96	6.19	2.42
45	E7a_E9a	KnownJunction	0	12.33	28.90	9.97	21.59	26.63	22.89	21.04
46	E7a_E11a	KnownJunction	0	0.00	0.00	3.46	1.11	4.40	3.00	2.06
47	I7	Intron	0	1.03	2.34	2.37	0.40	9.50	0.59	2.05
48	I7_AR1	ActiveIntronRegion	0	1.03	2.35	2.38	0.40	9.54	0.59	2.06
49	E8_Aa	NovelBoundary	0	3.61	2.94	7.49	1.52	32.27	0.00	5.16
50	ER8a	ExonRegion	0	6.42	10.53	7.13	8.58	16.68	2.69	1.28
51	E8_Da	NovelBoundary	1	9.25	11.80	22.89	22.19	28.89	7.18	6.55
52	I8	Intron	0	8.06	12.09	10.72	13.57	17.39	5.11	5.88
53	I8_AR1	ActiveIntronRegion	0	8.11	12.16	10.79	13.65	17.48	5.14	5.92
54	E9_Aa	NovelBoundary	1	8.16	12.87	10.65	9.02	13.56	1.39	9.03
55	ER9a	ExonRegion	0	19.12	32.48	27.94	32.87	45.60	29.11	21.97
56	E9_Da	NovelBoundary	0	1.92	4.18	2.51	1.68	9.31	0.00	4.17
57	E9a_E10a	KnownJunction	0	18.84	21.83	14.36	26.79	16.83	16.88	20.51
58	E9a_E11a	KnownJunction	0	5.51	4.12	8.77	8.80	5.35	6.08	2.67
59	I9	Intron	0	0.37	3.48	0.00	0.00	8.53	1.17	0.64
60	I9_AR1	ActiveIntronRegion	0	0.37	3.52	0.00	0.00	8.63	1.19	0.64
61	E10_Aa	NovelBoundary	0	1.97	1.63	1.37	2.63	13.02	4.56	3.05
62	ER10a	ExonRegion	0	22.78	26.29	18.10	31.35	39.07	15.64	16.35
63	E10a_E11a	KnownJunction	0	23.07	41.77	24.24	43.43	53.62	20.93	26.04
64	ER11a	ExonRegion	0	22.67	46.26	27.91	55.36	60.36	29.01	25.78
65	E11a_E12a	KnownJunction	0	28.54	49.47	32.10	57.27	67.08	26.91	27.03
66	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E12_Aa	NovelBoundary	1	14.44	0.00	11.07	0.00	1.18	0.00	0.00
68	ER12a	ExonRegion	0	33.74	43.66	31.98	51.50	56.34	23.56	25.46
69	E12a_E13a	KnownJunction	0	26.72	26.56	20.89	32.92	49.29	16.24	16.41
70	ER13a	ExonRegion	0	16.39	30.59	17.88	33.36	31.48	19.41	17.53
71	ER13b	ExonRegion	0	1.54	2.43	0.00	0.00	2.43	0.00	0.00
72	ER13c	ExonRegion	0	0.77	0.00	0.00	0.00	0.00	0.00	0.00
73	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER15a	ExonRegion	0	0.00	1.24	0.91	1.80	0.00	0.47	0.18
75	E15a_E16a	KnownJunction	0	0.00	3.02	0.00	1.68	0.00	2.79	0.89
76	ER16a	ExonRegion	0	0.64	0.67	2.94	1.76	0.00	1.19	0.81