Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ILKAP	Gene	0	60.58	125.72	95.30	170.83	87.47	170.92	77.06
2	254654	Transcript	0	68.67	131.64	106.19	179.50	98.67	177.06	83.45
3	ER1a	ExonRegion	0	2.83	17.99	5.15	31.05	4.52	31.91	5.04
4	E1a_E2a	KnownJunction	0	8.63	55.20	6.96	85.12	2.28	54.30	9.49
5	ER2a	ExonRegion	0	16.81	54.32	21.75	84.79	18.98	73.50	24.58
6	E2_Da	NovelBoundary	1	9.96	33.13	15.32	31.62	3.00	75.79	12.38
7	E2a_E3a	KnownJunction	0	25.39	48.16	42.09	67.19	30.38	81.12	38.90
8	E3_Aa	NovelBoundary	1	20.24	8.51	32.23	1.52	3.41	1.58	9.36
9	ER3a	ExonRegion	0	47.24	74.70	70.31	112.99	47.13	122.36	60.05
10	E3_Da	NovelBoundary	1	26.30	10.01	6.21	2.90	1.08	7.37	7.68
11	E3a_E4a	KnownJunction	0	54.89	94.84	78.88	162.60	51.45	163.34	66.84
12	E3a_E6a	NovelJunction	0	2.37	4.91	4.14	14.33	0.00	7.96	0.00
13	ER4a	ExonRegion	0	55.80	124.05	101.03	150.09	72.85	188.99	81.16
14	E4_Da	NovelBoundary	0	32.93	26.74	28.96	20.89	6.09	22.27	16.64
15	E4a_E5a	KnownJunction	0	44.04	99.81	82.41	104.87	62.04	103.45	71.16
16	I4	Intron	0	36.90	26.98	28.99	15.06	13.53	18.20	21.90
17	I4_AR1	ActiveIntronRegion	0	37.56	25.46	34.92	12.66	10.11	17.86	12.62
18	I4_SR1	SilentIntronRegion	0	17.73	14.86	19.99	5.39	9.85	12.03	8.93
19	I4_AR2	ActiveIntronRegion	1	38.30	28.99	26.44	17.35	15.86	19.00	28.45
20	E5_Aa	NovelBoundary	1	25.47	22.09	15.65	25.98	10.10	15.68	30.15
21	ER5a	ExonRegion	0	84.72	139.93	141.01	185.93	105.80	181.18	107.26
22	E5a_E6a	KnownJunction	0	104.50	143.10	157.99	160.54	130.50	161.36	93.20
23	E6_Aa	NovelBoundary	0	25.65	10.46	13.92	2.55	7.05	5.74	11.08
24	ER6a	ExonRegion	0	120.34	177.35	200.26	219.64	159.00	255.28	121.49
25	E6a_E7a	KnownJunction	0	122.69	181.64	219.03	248.15	168.40	273.89	135.93
26	ER7a	ExonRegion	0	124.00	193.69	201.84	259.14	168.00	283.65	121.30
27	E7a_E8a	KnownJunction	0	96.65	169.27	143.59	197.85	152.75	224.88	93.90
28	E7a_E9a	NovelJunction	1	7.11	13.82	12.99	79.46	4.01	72.98	0.89
29	ER8a	ExonRegion	0	90.74	201.65	149.39	221.22	179.69	220.18	127.85
30	E8a_E9a	KnownJunction	0	88.76	198.19	142.37	222.12	154.20	197.65	127.55
31	ER9a	ExonRegion	0	94.71	225.21	135.63	301.76	164.35	277.02	139.47
32	E9a_E10a	KnownJunction	0	93.05	194.70	115.39	280.66	155.15	261.73	112.34
33	I9_SR1	SilentIntronRegion	0	16.02	14.34	12.08	3.77	8.20	5.78	13.92
34	I9_AR2	ActiveIntronRegion	1	14.14	12.82	8.01	5.92	7.22	3.45	16.85
35	I9_AR6	ActiveIntronRegion	1	7.77	14.37	5.88	4.11	8.66	7.66	19.36
36	I9_SR4	SilentIntronRegion	1	7.31	13.57	5.82	6.91	6.91	4.02	17.13
37	I9_AR7	ActiveIntronRegion	1	7.56	14.20	5.27	4.13	5.86	4.39	16.80
38	ER10a	ExonRegion	0	80.97	174.89	116.65	262.70	131.42	223.50	105.90
39	E10a_E11a	KnownJunction	0	71.37	131.46	103.31	221.04	108.67	195.91	90.67
40	ER11a	ExonRegion	0	72.83	125.12	93.40	208.87	97.39	189.70	85.27
41	E11_Da	NovelBoundary	1	22.20	20.31	6.94	15.69	9.91	11.79	8.58
42	E11a_E12a	KnownJunction	0	54.63	110.76	76.29	209.44	76.07	179.00	62.48
43	ER12a	ExonRegion	0	23.76	91.63	37.69	130.73	28.30	128.46	37.53