Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LRRFIP1	Gene	0	361.09	725.12	254.07	459.41	112.31	299.05	420.07
2	308482	Transcript	0	5.74	16.29	6.58	15.80	10.72	19.06	10.88
3	244815	Transcript	0	372.16	451.19	242.16	287.55	64.23	181.54	334.93
4	289175	Transcript	0	109.74	384.17	89.57	278.06	61.37	165.76	105.24
5	392000	Transcript	0	0	0	0	0	0	0	0
6	305777	Transcript	0	0	0	0	0	0	0	0
7	391999	Transcript	0	40.43	94.43	28.45	37.28	10.63	34.34	31.75
8	ER1a	ExonRegion	0	5.07	11.40	1.73	12.82	4.63	14.96	3.87
9	E1a_E3a	KnownJunction	1	2.57	9.14	0.80	4.82	0.00	15.87	2.08
10	ER2a	ExonRegion	0	1.02	10.20	0.52	17.05	0.81	7.70	3.00
11	E2_Ab	KnownBoundary	0	8.73	33.44	2.37	44.24	0.90	25.65	13.34
12	ER2b	ExonRegion	0	29.54	194.55	17.90	143.49	7.98	92.44	53.88
13	E2a_E3a	KnownJunction	0	79.08	394.49	62.65	281.86	26.65	162.65	165.50
14	E2a_E13a	NovelJunction	1	3.61	42.59	3.42	29.72	7.58	5.74	1.66
15	ER3a	ExonRegion	0	110.98	480.12	72.50	345.54	31.53	210.65	169.44
16	E3a_E4a	KnownJunction	1	1.54	16.37	6.48	26.52	0.00	10.05	19.10
17	E3a_E6a	KnownJunction	1	3.52	52.31	5.20	8.18	2.95	10.32	55.86
18	E3a_E13a	KnownJunction	0	109.74	384.17	89.57	278.06	61.37	165.76	105.24
19	E4a_E5a	KnownJunction	0	0.00	23.15	2.51	20.59	2.21	14.98	16.88
20	ER4a	ExonRegion	0	0.09	29.83	5.12	32.14	1.62	18.93	28.60
21	Ix_SR1	SilentIntronRegion	0	94.50	28.71	32.66	8.85	1.70	10.84	6.63
22	Ix_AR1	ActiveIntronRegion	0	76.56	18.98	28.45	8.88	0.81	9.81	3.04
23	Ix_AR2	ActiveIntronRegion	0	78.48	21.15	28.72	9.11	1.71	10.61	4.66
24	ER5a	ExonRegion	0	1.25	37.84	6.35	38.24	2.53	27.61	38.44
25	E5_Da	NovelBoundary	1	110.49	41.72	33.24	12.90	5.26	8.17	11.24
26	E5a_E6a	KnownJunction	1	0.82	41.19	4.81	32.86	0.00	25.57	33.81
27	Ix_SR2	SilentIntronRegion	0	84.84	28.40	28.93	7.01	1.67	7.96	7.89
28	ER6a	ExonRegion	1	11.49	121.59	13.67	56.42	3.02	47.27	115.19
29	E6a_E7a	KnownJunction	1	19.33	129.39	10.20	45.24	0.88	42.42	107.08
30	ER7a	ExonRegion	1	12.96	124.63	11.87	40.61	1.45	39.11	85.22
31	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E7a_E9a	NovelJunction	1	5.29	38.93	1.49	10.10	0.92	13.51	53.59
33	E7a_E13a	KnownJunction	1	5.31	87.19	8.02	17.45	1.18	27.34	45.14
34	Ix_SR1	SilentIntronRegion	0	92.97	37.53	33.75	11.07	2.33	9.70	9.92
35	ER8a	ExonRegion	0	0.02	0.00	0.00	0.00	0.02	0.00	0.00
36	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER9a	ExonRegion	0	1.27	0.00	0.00	0.00	2.15	0.00	0.00
38	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	0.00	0.00
39	E9a_E13a	NovelJunction	1	3.87	23.99	4.74	23.73	4.06	9.59	47.12
40	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.76	0.00	0.00
41	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.83
44	ER12a	ExonRegion	0	4.98	8.77	1.89	1.77	1.14	6.99	0.74
45	E12a_E13a	KnownJunction	0	1.90	5.70	0.65	1.52	0.00	4.37	2.42
46	Ix_SR3	SilentIntronRegion	0	73.41	46.66	21.07	7.76	1.44	16.52	15.40
47	ER13a	ExonRegion	0	232.20	789.62	185.30	461.62	122.04	339.91	294.20
48	E13a_E14a	KnownJunction	0	306.09	820.82	203.67	470.71	158.26	367.48	332.96
49	ER14a	ExonRegion	0	492.10	1432.49	318.82	869.42	206.48	639.36	505.30
50	E14a_E15a	KnownJunction	1	38.29	178.30	72.15	159.40	120.98	159.30	40.87
51	E14a_E16a	KnownJunction	0	704.22	1831.99	418.64	1032.79	127.85	710.03	646.88
52	ER15a	ExonRegion	1	63.26	179.85	104.03	168.70	120.65	177.21	56.18
53	E15a_E16a	KnownJunction	1	81.43	162.28	108.80	161.19	139.05	192.48	57.31
54	ER16a	ExonRegion	0	869.41	1969.06	631.87	1284.92	312.31	960.64	872.30
55	E16a_E17a	KnownJunction	0	1057.36	1929.95	687.58	1255.70	320.69	949.92	863.71
56	ER17a	ExonRegion	0	837.77	1831.29	680.58	1210.28	339.15	840.99	980.22
57	E17a_E18a	KnownJunction	0	32.63	62.89	18.71	63.61	4.45	42.05	20.97
58	E17a_E19a	NovelJunction	0	8.51	30.21	8.71	22.00	5.16	13.64	3.57
59	E17a_E20a	KnownJunction	0	663.88	1603.82	586.57	1056.01	339.55	671.12	967.47
60	ER18a	ExonRegion	0	39.24	48.01	31.31	38.74	2.93	26.96	14.54
61	E18a_E19a	KnownJunction	0	2.57	17.63	6.78	9.92	1.01	8.82	4.14
62	E18a_E20a	NovelJunction	1	14.59	15.45	7.21	13.79	3.99	9.19	27.46
63	ER19a	ExonRegion	0	19.36	44.31	22.00	28.51	7.84	31.52	8.68
64	E19a_E20a	KnownJunction	0	19.81	45.03	15.09	40.72	12.84	48.53	7.07
65	ER20a	ExonRegion	0	636.84	1735.20	558.48	1111.73	359.74	733.62	981.71
66	E20_Da	NovelBoundary	1	136.56	181.33	76.65	43.62	4.40	13.78	11.25
67	E20a_E21a	KnownJunction	0	502.68	1539.61	403.15	1025.80	121.58	558.37	887.49
68	E20a_E23a	KnownJunction	1	7.34	6.07	39.48	39.69	211.72	179.26	68.42
69	Ix	Intron	1	120.69	102.18	63.14	41.59	2.54	13.91	8.56
70	Ix_AR4	ActiveIntronRegion	0	154.46	134.84	66.76	50.67	3.76	18.22	11.93
71	Ix_SR1	SilentIntronRegion	0	109.27	84.28	60.61	35.93	1.82	12.47	7.81
72	Ix_AR5	ActiveIntronRegion	0	127.19	117.00	80.48	44.37	2.98	15.45	8.37
73	Ix_AR6	ActiveIntronRegion	0	135.09	108.04	68.10	50.38	3.78	11.03	9.31
74	Ix_SR2	SilentIntronRegion	0	105.42	94.39	50.95	44.51	2.40	11.17	6.14
75	ER21a	ExonRegion	0	529.21	1823.54	434.12	1119.59	140.96	563.23	1013.94
76	E21_Ab	KnownBoundary	0	431.79	1348.96	352.42	828.61	121.88	446.78	685.37
77	E21_Da	KnownBoundary	0	571.11	1297.68	453.60	810.94	74.21	451.07	745.81
78	ER21b	ExonRegion	0	661.27	1706.79	539.78	1031.70	109.28	565.06	935.21
79	ER21c	ExonRegion	0	725.98	1358.23	478.38	891.51	127.52	495.41	801.09
80	E21_Ac	KnownBoundary	0	365.81	1290.06	283.35	805.74	137.88	390.63	570.91
81	ER21d	ExonRegion	0	436.09	1313.34	294.25	781.83	122.51	406.68	688.01
82	E21_Db	KnownBoundary	0	604.53	1178.85	367.03	724.23	164.78	329.32	762.16
83	ER21e	ExonRegion	0	743.30	892.18	483.80	558.05	127.65	355.39	666.86
84	E21_Dc	NovelBoundary	0	119.92	289.01	99.23	181.05	63.26	143.94	182.28
85	Ix	Intron	0	84.90	92.27	57.05	53.09	6.26	56.61	37.45
86	Ix_AR1	ActiveIntronRegion	0	283.68	337.13	219.19	220.80	23.29	249.28	184.79
87	ER22a	ExonRegion	0	52.40	106.40	36.06	42.61	10.38	39.83	33.39
88	E22a_E23a	KnownJunction	0	28.47	82.47	20.84	31.94	10.88	28.84	30.11
89	ER23a	ExonRegion	1	30.54	88.56	60.57	64.12	238.68	232.89	113.71
90	E23a_E24a	KnownJunction	1	16.46	61.87	42.98	44.10	197.45	193.12	89.84
91	ER24a	ExonRegion	1	55.21	106.77	66.55	80.46	201.72	219.54	102.99
92	E24a_E25a	KnownJunction	1	24.70	76.66	44.55	65.56	238.34	196.25	82.52
93	ER25a	ExonRegion	1	41.31	97.07	57.82	70.77	178.03	188.54	99.13
94	E25a_E26a	KnownJunction	1	61.52	120.74	76.15	91.11	212.25	212.17	118.62
95	ER26a	ExonRegion	1	69.14	109.48	70.04	79.12	190.96	163.68	88.89
96	E26a_E27a	KnownJunction	1	64.62	98.89	53.99	71.87	143.92	147.80	70.91
97	ER27a	ExonRegion	1	89.28	89.24	50.11	76.57	130.11	147.31	51.16
98	ER27b	ExonRegion	0	3.07	0.00	0.68	2.49	11.34	0.00	1.35
99	IG14	Intergenic	0	12.81	11.00	7.40	6.92	2.77	10.32	2.22
100	IG14_AR1	ActiveIntergenicRegion	0	29.35	25.74	17.39	14.08	8.88	18.90	3.62
101	IG14_SR1	SilentIntergenicRegion	0	12.31	10.42	7.04	6.69	2.49	10.17	2.23