Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRIP12	Gene	0	374.32	278.85	399.56	255.31	242.77	283.36	347.80
2	409677	Transcript	0	24.86	4.98	14.21	6.00	5.47	7.16	7.39
3	283943	Transcript	1	83.08	132.93	102.62	101.16	20.78	134.83	36.47
4	389044	Transcript	0	0	0	0	0	0	0	0
5	389045	Transcript	0	189.58	104.94	195.51	104.07	114.69	102.07	169.80
6	ER1a	ExonRegion	0	12.79	3.73	8.85	6.32	7.52	5.69	6.84
7	ER1b	ExonRegion	0	54.86	43.34	43.46	37.83	33.34	31.79	37.64
8	E1a_E2a	KnownJunction	0	62.22	59.87	57.29	58.54	10.79	49.31	45.33
9	ER2a	ExonRegion	0	142.07	208.86	151.62	164.57	52.88	203.37	115.52
10	E2a_E3a	KnownJunction	0	155.90	77.24	130.47	42.59	63.33	70.24	149.38
11	E2a_E4a	KnownJunction	1	131.37	256.65	169.89	198.39	38.41	262.74	71.60
12	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	160.43	88.48	148.12	66.38	74.59	91.68	185.25
14	E3a_E4a	KnownJunction	0	160.64	73.69	158.19	55.08	65.49	91.17	234.48
15	ER4a	ExonRegion	0	245.56	284.70	297.06	238.90	112.13	264.95	252.86
16	E4a_E5a	KnownJunction	0	298.98	239.94	351.37	198.88	94.33	201.78	211.10
17	ER5a	ExonRegion	0	239.64	215.06	270.37	191.94	92.85	198.41	186.96
18	E5a_E6a	KnownJunction	0	165.40	168.48	207.21	182.11	77.83	164.68	158.94
19	ER6a	ExonRegion	0	154.96	171.81	191.11	157.87	76.34	158.17	170.63
20	E6a_E7a	KnownJunction	0	0.97	0.00	2.79	4.33	0.00	8.39	0.00
21	E6a_E8a	KnownJunction	0	92.10	128.89	123.35	127.14	52.05	136.71	131.40
22	E6a_E8b	KnownJunction	0	34.80	9.22	35.35	3.93	3.16	6.91	1.33
23	E6a_E10a	NovelJunction	0	2.35	8.22	9.66	6.77	0.95	15.14	1.16
24	ER7a	ExonRegion	0	60.82	11.22	30.99	7.34	8.89	7.39	15.33
25	E7_Da	NovelBoundary	1	125.99	26.30	65.27	8.99	9.82	8.04	25.11
26	E8_Ab	NovelBoundary	0	99.22	118.98	104.23	123.91	49.33	107.79	112.26
27	ER8a	ExonRegion	0	107.30	142.97	130.38	135.46	58.27	140.34	141.06
28	ER8b	ExonRegion	0	169.73	168.25	190.58	165.39	111.26	134.24	196.16
29	E8a_E9a	KnownJunction	0	238.92	180.46	239.94	181.08	171.72	131.37	240.51
30	ER9a	ExonRegion	0	260.18	245.27	298.63	229.34	159.71	166.58	260.07
31	E9a_E10a	KnownJunction	0	229.42	287.25	302.65	244.63	179.07	194.14	250.81
32	ER10a	ExonRegion	0	313.52	288.74	352.18	260.97	195.90	205.25	326.49
33	E10a_E11a	KnownJunction	0	290.56	235.39	312.86	201.40	220.45	156.56	281.08
34	ER11a	ExonRegion	0	344.84	305.91	415.73	297.09	238.05	222.18	360.42
35	E11a_E12a	KnownJunction	0	287.12	250.05	340.63	273.84	250.12	205.58	284.25
36	ER12a	ExonRegion	0	399.93	319.18	437.71	297.49	224.53	231.60	369.08
37	E12a_E13a	KnownJunction	0	404.00	279.34	402.99	244.80	197.10	202.53	353.99
38	ER13a	ExonRegion	0	334.29	304.18	378.39	274.47	202.30	215.82	337.19
39	E13a_E14a	KnownJunction	0	313.44	309.03	310.24	226.94	120.64	184.01	228.64
40	ER14a	ExonRegion	0	318.92	283.35	372.08	216.77	193.00	173.53	323.80
41	E14a_E15a	KnownJunction	0	285.83	240.86	369.71	203.29	165.82	159.86	299.96
42	ER15a	ExonRegion	0	261.56	219.48	339.89	196.12	171.11	170.22	313.68
43	E15a_E16a	KnownJunction	0	236.43	201.48	302.98	175.23	165.59	165.92	311.95
44	ER16a	ExonRegion	0	292.67	220.14	420.94	205.34	199.85	194.96	348.10
45	E16a_E17a	KnownJunction	0	312.29	203.37	384.41	232.14	221.98	198.61	311.61
46	ER17a	ExonRegion	0	369.34	299.10	478.24	301.93	271.97	233.79	429.73
47	E17a_E18a	KnownJunction	0	443.30	361.36	515.77	313.12	286.98	217.86	421.17
48	ER18a	ExonRegion	0	480.14	323.59	487.08	318.23	282.55	265.08	444.84
49	E18a_E19a	KnownJunction	0	240.54	141.21	255.26	147.40	150.58	145.39	241.64
50	E18a_E19b	KnownJunction	0	81.30	59.35	70.37	72.20	66.65	97.69	96.18
51	I18_SR1	SilentIntronRegion	0	75.26	16.22	77.93	16.51	8.67	10.59	22.09
52	I18_SR2	SilentIntronRegion	0	93.58	26.87	79.12	24.12	9.99	14.51	27.71
53	ER19a	ExonRegion	0	328.21	173.61	331.28	164.80	193.48	160.83	267.75
54	E19_Ab	KnownBoundary	0	342.61	168.85	386.75	187.28	189.68	150.37	288.35
55	ER19b	ExonRegion	0	350.23	254.16	435.89	259.35	237.62	234.49	378.92
56	E19a_E20a	KnownJunction	0	283.16	242.30	351.96	250.32	213.05	223.75	332.42
57	ER20a	ExonRegion	0	430.47	281.51	520.81	280.07	236.84	263.11	383.95
58	E20a_E21a	KnownJunction	0	481.25	363.54	603.90	315.83	245.31	329.29	433.53
59	ER21a	ExonRegion	0	409.43	272.83	482.93	275.03	225.74	261.15	389.51
60	E21a_E22a	KnownJunction	0	369.95	305.69	457.84	283.24	212.57	283.25	386.79
61	ER22a	ExonRegion	0	463.66	327.92	447.31	302.50	300.54	296.18	466.05
62	E22a_E23a	KnownJunction	0	554.36	408.10	468.88	370.23	193.51	383.96	412.00
63	ER23a	ExonRegion	0	691.74	464.68	639.48	423.68	398.58	424.09	699.91
64	E23a_E24a	KnownJunction	0	576.60	414.54	593.16	380.36	691.84	444.42	683.94
65	ER24a	ExonRegion	0	316.69	235.62	338.55	207.74	210.21	220.64	316.31
66	E24a_E25a	KnownJunction	0	230.29	217.19	317.31	185.71	159.34	225.55	290.35
67	ER25a	ExonRegion	0	251.48	209.26	345.93	184.01	183.40	185.29	312.01
68	E25a_E26a	KnownJunction	0	185.53	174.49	312.55	185.49	185.76	167.50	303.47
69	ER26a	ExonRegion	0	334.91	198.16	411.58	182.02	226.74	195.11	331.90
70	E26a_E27a	KnownJunction	0	620.00	213.72	562.73	188.53	192.93	242.59	307.91
71	ER27a	ExonRegion	0	642.04	292.25	585.05	242.56	316.85	306.07	353.44
72	E27a_E28a	KnownJunction	0	768.34	288.85	634.91	272.75	427.03	354.75	384.63
73	ER28a	ExonRegion	0	562.78	295.68	518.75	242.58	369.82	291.70	417.85
74	E28a_E29a	KnownJunction	0	350.47	344.39	417.88	241.03	306.72	312.46	407.33
75	ER29a	ExonRegion	0	407.04	375.87	465.68	284.98	316.71	332.92	505.02
76	E29a_E30a	KnownJunction	0	444.37	370.09	500.69	337.74	327.40	359.41	552.08
77	ER30a	ExonRegion	0	394.70	334.13	460.89	293.73	338.77	333.23	497.01
78	E30a_E31a	KnownJunction	0	444.87	310.40	503.72	328.67	307.48	362.33	457.65
79	ER31a	ExonRegion	0	437.33	322.03	529.14	291.39	327.25	341.62	493.23
80	E31a_E32a	KnownJunction	0	451.01	351.17	540.76	275.52	289.57	333.52	472.71
81	ER32a	ExonRegion	0	467.41	330.19	550.83	301.08	361.57	341.99	483.03
82	E32a_E33a	KnownJunction	0	472.94	311.89	533.05	281.58	427.91	297.99	384.97
83	ER33a	ExonRegion	0	559.10	323.83	584.50	292.41	386.65	339.43	431.55
84	E33a_E34a	KnownJunction	0	604.04	278.21	541.46	230.25	426.25	270.87	324.15
85	E33a_E35a	NovelJunction	0	16.17	11.38	15.36	14.33	0.00	20.13	7.93
86	ER34a	ExonRegion	0	769.26	319.59	593.52	260.77	416.20	292.46	379.98
87	E34a_E35a	KnownJunction	1	656.37	287.83	415.39	241.27	320.76	268.99	289.55
88	ER35a	ExonRegion	0	651.86	293.70	464.86	285.81	307.40	320.18	364.66
89	E35a_E36a	KnownJunction	0	584.01	278.66	436.14	257.50	354.44	356.41	317.64
90	E35a_E37a	NovelJunction	1	2.22	1.08	0.89	0.00	0.00	12.49	0.00
91	ER36a	ExonRegion	0	431.91	262.08	393.84	250.16	326.88	306.15	360.14
92	E36a_E37a	KnownJunction	0	378.19	243.85	410.80	243.01	369.93	339.39	393.74
93	ER37a	ExonRegion	0	370.88	320.72	424.74	288.37	292.31	375.81	425.02
94	E37a_E38a	KnownJunction	0	322.32	337.22	406.68	299.09	279.19	351.10	389.59
95	E37a_E39a	NovelJunction	1	9.91	5.39	5.45	3.36	0.00	16.11	1.75
96	ER38a	ExonRegion	0	378.60	365.63	451.73	328.50	305.10	417.92	467.66
97	E38a_E39a	KnownJunction	0	355.80	343.16	434.85	276.28	369.15	353.54	359.92
98	E38a_E40a	NovelJunction	0	6.76	1.63	6.22	4.06	0.00	10.64	0.00
99	ER39a	ExonRegion	0	439.70	366.58	466.85	318.49	367.09	432.08	412.72
100	E39_Da	NovelBoundary	1	61.05	81.05	59.64	19.78	15.33	14.71	33.84
101	E39a_E40a	KnownJunction	0	570.68	335.70	574.78	362.83	358.13	476.82	466.04
102	E39a_E41a	NovelJunction	1	12.70	17.65	21.34	7.53	3.27	30.85	6.85
103	I39_AR2	ActiveIntronRegion	0	85.75	39.19	46.60	12.41	10.13	17.31	18.28
104	ER40a	ExonRegion	0	622.99	374.68	571.44	386.57	417.16	469.28	435.24
105	E40a_E41a	KnownJunction	0	425.36	314.65	436.44	339.26	347.18	361.53	394.50
106	ER41a	ExonRegion	0	509.44	330.77	497.96	329.42	395.47	393.33	430.43
107	E41a_E42a	KnownJunction	0	555.42	310.21	523.41	260.10	383.05	372.46	413.78
108	ER42a	ExonRegion	0	414.38	333.77	456.89	300.35	340.01	387.32	393.14
109	E42a_E43a	KnownJunction	0	348.39	325.74	413.06	286.54	296.69	351.08	368.99
110	ER43a	ExonRegion	0	403.85	309.13	394.11	340.05	320.93	500.69	356.10
111	IG37	Intergenic	0	11.79	6.97	12.13	7.77	12.49	11.46	10.26
112	IG37_AR7	ActiveIntergenicRegion	0	72.23	45.69	80.35	50.69	87.31	74.52	57.68
113	IG37_AR6	ActiveIntergenicRegion	0	2.73	4.76	3.52	2.35	1.35	4.15	7.87