Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CUL3	Gene	0	190.66	175.11	208.34	218.92	218.48	194.64	108.41
2	344951	Transcript	1	47.15	37.94	28.05	41.91	30.11	47.76	5.98
3	264414	Transcript	0	98.67	280.50	173.12	292.75	128.29	246.53	106.43
4	409096	Transcript	0	1.71	0.67	0.94	0.00	0.30	2.37	0.00
5	409777	Transcript	0	4.79	1.92	2.88	1.73	0.59	0.93	0.98
6	ER1a	ExonRegion	0	24.90	81.22	31.24	75.71	33.37	73.62	21.10
7	E1a_E4a	KnownJunction	0	98.67	280.50	173.12	292.75	128.29	246.53	106.43
8	E1a_E5a	KnownJunction	1	47.15	37.94	28.05	41.91	30.11	47.76	5.98
9	ER2a	ExonRegion	0	3.41	1.35	1.88	0.00	0.60	1.41	0.00
10	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.32	0.00
11	ER3a	ExonRegion	0	9.58	3.85	5.75	3.47	1.18	1.87	1.97
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER4a	ExonRegion	0	234.22	408.07	334.72	460.36	317.25	374.23	201.70
14	E4a_E5a	KnownJunction	0	413.78	453.58	509.14	511.67	516.57	396.85	235.34
15	ER5a	ExonRegion	0	480.40	607.23	585.15	694.81	533.05	541.96	340.43
16	E5a_E6a	KnownJunction	0	425.59	623.39	533.30	701.96	458.18	498.80	318.43
17	I5_AR11	ActiveIntronRegion	0	50.25	26.58	36.26	19.89	6.20	12.31	11.10
18	I5_SR8	SilentIntronRegion	0	52.48	14.93	32.35	17.66	7.65	10.17	8.73
19	I5_SR9	SilentIntronRegion	0	62.09	13.29	31.81	12.42	7.08	20.59	6.75
20	E6_Aa	NovelBoundary	0	89.83	19.62	44.23	18.61	5.30	10.85	18.10
21	ER6a	ExonRegion	0	473.90	486.75	543.94	528.98	484.29	403.83	284.05
22	E6a_E7a	KnownJunction	0	308.11	365.88	429.54	418.75	373.43	307.37	211.00
23	E7_Aa	NovelBoundary	1	151.34	3.76	204.45	5.53	0.00	2.49	2.31
24	ER7a	ExonRegion	0	380.44	317.62	527.48	383.84	351.33	327.68	215.73
25	E7a_E8a	KnownJunction	0	392.88	261.82	565.34	356.19	304.99	311.92	189.45
26	E7a_E9a	NovelJunction	0	1.54	14.87	6.32	7.37	1.13	7.26	1.66
27	ER8a	ExonRegion	0	424.57	366.60	593.45	464.75	422.72	366.18	251.81
28	E8a_E9a	KnownJunction	0	438.04	474.12	612.22	536.40	443.67	350.73	290.01
29	ER9a	ExonRegion	0	389.89	471.71	550.29	544.91	491.95	406.07	304.87
30	E9a_E10a	KnownJunction	0	441.20	398.14	518.45	512.67	590.11	363.19	236.53
31	ER10a	ExonRegion	0	599.60	479.39	670.37	631.15	580.97	481.61	290.43
32	E10a_E11a	KnownJunction	0	780.32	604.72	831.34	786.37	625.29	599.78	326.76
33	I10	Intron	0	41.13	17.89	29.53	13.41	5.59	8.23	7.86
34	I10_SR2	SilentIntronRegion	0	39.12	11.95	26.90	14.38	5.38	6.72	5.84
35	I10_AR3	ActiveIntronRegion	0	81.97	20.65	49.90	18.08	2.97	12.46	14.95
36	I10_SR3	SilentIntronRegion	0	57.93	23.87	34.49	12.82	6.61	6.68	11.33
37	E11_Aa	NovelBoundary	1	58.68	23.85	40.97	10.08	9.24	5.68	10.89
38	ER11a	ExonRegion	0	1076.28	628.49	962.84	771.35	1133.38	635.00	429.52
39	E11a_E12a	KnownJunction	0	1384.23	701.71	1066.32	863.58	1224.98	740.72	584.02
40	ER12a	ExonRegion	0	1062.31	810.79	900.28	979.88	1041.08	826.12	556.91
41	E12_Da	NovelBoundary	1	65.36	19.70	53.47	13.92	0.00	13.08	2.75
42	E12a_E13a	KnownJunction	0	1072.78	744.53	875.66	945.13	957.80	794.80	556.70
43	I12_AR2	ActiveIntronRegion	1	39.96	11.56	32.98	8.69	2.89	6.76	3.93
44	ER13a	ExonRegion	0	913.80	648.93	729.39	829.97	1208.51	701.31	517.29
45	E13a_E14a	KnownJunction	0	629.21	546.21	532.29	702.34	905.72	618.11	382.79
46	E14_Aa	NovelBoundary	1	242.71	12.48	234.06	10.62	1.78	6.99	1.78
47	ER14a	ExonRegion	0	543.02	541.49	574.76	709.30	878.25	647.68	378.13
48	E14a_E15a	KnownJunction	0	505.24	465.85	550.77	654.22	613.16	623.87	353.31
49	ER15a	ExonRegion	0	485.12	487.92	554.89	616.39	611.23	604.23	316.63
50	E15a_E16a	KnownJunction	0	460.64	417.53	593.72	592.48	621.90	528.33	305.09
51	E15a_E17a	NovelJunction	1	0.00	4.39	10.84	21.37	0.00	18.49	0.00
52	ER16a	ExonRegion	0	459.60	485.05	536.76	621.31	624.82	630.70	322.63
53	E16a_E17a	KnownJunction	0	447.27	593.97	522.82	741.62	618.60	872.12	324.36
54	ER17a	ExonRegion	0	511.48	507.94	512.34	707.15	646.24	740.56	324.51
55	E17a_E18a	KnownJunction	0	626.16	443.12	525.31	681.31	917.69	616.85	323.57
56	ER18a	ExonRegion	0	426.94	376.15	405.89	452.31	436.28	525.92	206.39
57	E18_Da	KnownBoundary	0	139.58	117.35	139.28	154.55	140.92	170.71	51.36
58	E18_Db	KnownBoundary	0	45.16	30.79	78.75	66.73	93.53	41.14	16.94
59	ER18b	ExonRegion	0	124.67	114.48	163.13	154.62	156.40	160.32	47.70
60	ER18c	ExonRegion	0	14.54	13.17	25.01	26.51	22.48	19.63	6.78