Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WDSUB1	Gene	0	46.16	19.03	30.23	13.13	45.80	22.74	34.37
2	359774	Transcript	0	0	0	0	0	0	0	0
3	358147	Transcript	0	0.87	0.00	1.14	0.00	5.19	0.00	2.14
4	409124	Transcript	0	3.40	2.15	6.08	4.14	1.15	3.16	5.10
5	409990	Transcript	0	3.46	0.45	1.42	1.95	0.73	0.14	3.72
6	392796	Transcript	0	0.67	0.00	0.50	0.00	0.00	0.00	0.00
7	IG25_SR4	SilentIntergenicRegion	0	10.88	3.52	3.55	0.00	3.18	5.86	0.92
8	IG25_AR3	ActiveIntergenicRegion	0	29.07	4.84	8.42	2.48	6.79	5.58	2.67
9	IG25_SR3	SilentIntergenicRegion	0	37.04	5.84	10.56	5.06	10.75	14.33	4.62
10	IG25_SR2	SilentIntergenicRegion	0	21.06	1.23	8.57	2.09	6.64	8.45	1.93
11	ER1a	ExonRegion	0	1.24	0.00	0.55	0.18	2.10	2.24	0.65
12	E1_Ab	KnownBoundary	0	3.02	0.00	1.31	1.03	7.10	7.56	1.50
13	ER1b	ExonRegion	0	8.62	3.42	4.38	4.79	12.66	11.03	3.19
14	E1a_E2a	KnownJunction	1	15.25	6.91	8.08	4.14	14.78	7.93	3.97
15	ER1c	ExonRegion	0	13.49	7.29	8.50	6.65	17.55	8.99	5.47
16	E1_Ad	KnownBoundary	0	1.52	0.00	0.82	1.68	0.00	0.00	1.12
17	ER1d	ExonRegion	0	0.00	0.00	0.00	1.25	0.00	0.00	0.00
18	ER1e	ExonRegion	0	2.57	1.60	1.73	1.92	0.34	0.52	0.91
19	E1_Db	KnownBoundary	0	2.60	4.20	2.14	5.85	2.35	1.45	0.63
20	E1b_E2a	KnownJunction	0	0.67	0.00	0.50	0.00	0.00	0.00	0.00
21	ER1f	ExonRegion	0	3.93	1.34	1.95	3.08	1.07	0.41	4.54
22	E1c_E2a	KnownJunction	0	6.46	0.00	2.30	1.52	1.11	0.00	6.61
23	ER2a	ExonRegion	0	41.41	34.97	23.44	20.40	38.74	35.59	38.57
24	E2a_E3a	KnownJunction	0	57.80	29.14	32.22	21.51	73.82	34.68	43.12
25	ER3a	ExonRegion	0	74.97	33.99	51.53	20.52	65.77	40.42	52.09
26	E3_Da	NovelBoundary	1	26.40	2.55	8.31	1.19	0.00	9.43	3.91
27	E3a_E4a	KnownJunction	0	48.93	13.16	40.37	10.10	65.91	23.32	51.28
28	E3a_E9a	NovelJunction	0	3.39	1.50	2.24	4.77	0.92	9.86	2.28
29	I3_SR1	SilentIntronRegion	0	13.66	0.00	4.63	2.36	0.62	4.61	2.31
30	ER4a	ExonRegion	0	45.78	12.17	36.09	12.58	63.58	16.72	38.32
31	E4a_E5a	KnownJunction	1	36.82	14.50	27.75	5.88	26.58	0.00	22.66
32	E4a_E6a	NovelJunction	0	8.04	5.54	1.34	3.77	7.98	4.21	2.79
33	E4a_E9a	KnownJunction	0	0.87	0.00	1.14	0.00	5.19	0.00	2.14
34	ER5a	ExonRegion	1	34.60	10.43	25.72	2.73	46.62	3.43	32.63
35	E5_Da	NovelBoundary	1	13.25	5.18	3.62	1.68	0.00	1.26	2.68
36	E5a_E6a	KnownJunction	0	24.07	4.39	14.89	1.16	35.89	4.56	19.46
37	I5_AR1	ActiveIntronRegion	0	17.48	1.99	5.39	1.27	3.97	2.05	2.46
38	I5_SR2	SilentIntronRegion	0	13.45	2.89	6.72	2.19	3.08	2.15	3.20
39	I5_AR2	ActiveIntronRegion	0	16.77	1.69	8.50	2.21	3.01	4.88	3.36
40	ER6a	ExonRegion	0	34.60	9.18	23.77	5.90	53.66	8.98	34.56
41	E6a_E7a	KnownJunction	0	28.62	10.56	21.35	9.48	66.14	7.93	28.91
42	I6_AR2	ActiveIntronRegion	0	17.90	0.71	4.73	0.48	3.16	0.48	1.97
43	E7_Aa	NovelBoundary	1	17.06	4.39	6.81	2.82	5.90	0.00	2.49
44	ER7a	ExonRegion	0	50.47	10.22	27.57	10.19	81.85	13.99	51.43
45	E7_Da	NovelBoundary	1	13.65	0.00	6.42	0.00	6.85	0.00	2.29
46	E7a_E8a	KnownJunction	0	52.07	7.57	21.96	7.88	87.62	12.73	50.05
47	E8_Aa	NovelBoundary	1	23.53	1.39	12.50	0.00	3.23	8.90	2.49
48	ER8a	ExonRegion	0	74.19	12.85	37.81	9.89	81.94	18.14	50.21
49	E8_Da	NovelBoundary	1	19.09	0.00	6.29	0.00	2.03	11.55	2.34
50	E8a_E9a	KnownJunction	0	64.79	15.37	38.96	10.13	80.59	19.83	46.73
51	ER9a	ExonRegion	0	90.77	23.28	46.63	19.00	89.13	33.33	51.89
52	E9_Da	NovelBoundary	0	13.24	3.13	8.31	3.85	0.00	2.39	4.73
53	E9a_E10a	KnownJunction	0	55.36	18.71	37.35	10.16	71.07	15.49	43.44
54	E9a_E11a	KnownJunction	0	3.40	2.15	6.08	4.14	1.15	3.16	5.10
55	I9_AR1	ActiveIntronRegion	1	10.37	6.48	6.66	4.99	0.81	9.81	10.34
56	I9_AR2	ActiveIntronRegion	1	10.09	8.05	6.52	5.77	0.81	9.81	10.03
57	I9_AR3	ActiveIntronRegion	1	9.86	4.65	5.20	3.05	2.23	7.58	8.13
58	I9_AR4	ActiveIntronRegion	1	16.93	1.86	9.44	5.21	1.74	11.85	4.19
59	E10_Aa	NovelBoundary	1	9.33	1.16	10.02	3.90	3.46	11.77	2.06
60	ER10a	ExonRegion	0	88.92	23.79	55.42	15.78	80.94	26.49	44.50
61	E10_Da	NovelBoundary	1	30.71	2.21	15.69	5.23	8.88	6.54	6.23
62	E10a_E11a	KnownJunction	0	48.15	16.60	45.76	13.84	50.92	20.90	38.52
63	I10	Intron	0	15.30	3.71	9.36	2.60	5.04	4.45	5.40
64	I10_SR1	SilentIntronRegion	0	20.96	4.08	12.26	2.90	4.32	6.21	6.34
65	I10_AR2	ActiveIntronRegion	0	18.84	4.30	8.55	3.07	7.01	2.40	8.62
66	E11_Aa	NovelBoundary	0	10.56	4.49	6.57	3.01	2.01	2.57	9.46
67	ER11a	ExonRegion	0	41.96	16.39	40.29	14.61	36.54	25.59	38.34
68	E11_Da	KnownBoundary	0	8.48	9.27	10.12	1.68	5.28	7.02	8.58
69	E11_Db	KnownBoundary	0	10.70	3.94	14.89	3.25	10.95	0.00	9.44
70	ER11b	ExonRegion	0	13.12	7.15	14.00	1.25	7.02	4.77	8.00
71	ER11c	ExonRegion	0	6.50	1.40	6.55	0.68	5.74	1.15	3.70
72	IG24_AR3	ActiveIntergenicRegion	0	9.64	3.12	7.10	1.94	0.28	2.54	4.03
73	IG24_SR1	SilentIntergenicRegion	0	11.45	3.56	6.94	0.97	1.56	1.38	3.57