Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AMMECR1L	Gene	0	134.83	180.03	145.43	139.75	79.02	171.92	122.40
2	272647	Transcript	0	31.39	87.22	46.24	67.30	22.90	82.42	47.76
3	393001	Transcript	1	3.44	4.51	1.73	4.12	1.39	25.87	0.53
4	IG28_AR4	ActiveIntergenicRegion	0	4.63	6.24	1.80	8.44	0.91	78.12	0.70
5	IG28_SR2	SilentIntergenicRegion	0	1.74	3.50	1.31	4.45	1.20	40.06	0.56
6	IG28_AR3	ActiveIntergenicRegion	0	6.14	2.76	4.24	5.25	12.65	11.83	1.41
7	IG28_AR1	ActiveIntergenicRegion	0	5.93	4.94	4.48	3.40	9.16	9.18	2.96
8	ER1a	ExonRegion	0	55.76	149.34	87.45	129.03	48.38	121.34	102.06
9	E1a_E3a	KnownJunction	0	35.00	106.24	47.49	66.10	14.09	114.01	34.97
10	E1a_E4a	NovelJunction	0	10.93	16.26	3.16	13.52	0.00	6.32	6.28
11	E2_Aa	NovelBoundary	1	13.65	22.46	4.79	27.04	1.18	203.52	9.72
12	ER2a	ExonRegion	1	6.88	8.02	3.45	8.23	2.78	49.22	1.05
13	E2_Da	NovelBoundary	1	10.41	11.51	7.89	11.16	1.84	220.56	2.48
14	E2a_E3a	KnownJunction	0	0.00	1.00	0.00	0.00	0.00	2.52	0.00
15	ER3a	ExonRegion	0	76.27	176.08	98.12	121.90	36.10	199.89	64.89
16	E3a_E4a	KnownJunction	0	92.71	279.97	138.67	150.30	33.96	237.90	105.72
17	ER4a	ExonRegion	0	165.76	350.09	210.85	230.32	84.20	314.20	168.52
18	E4a_E5a	KnownJunction	0	82.13	158.86	93.85	94.76	66.67	126.55	100.49
19	E4a_E6a	NovelJunction	0	9.68	31.97	13.09	23.54	6.29	33.63	13.14
20	E4a_E8a	NovelJunction	1	35.65	67.54	43.59	53.91	7.40	84.34	15.03
21	E4a_E9a	NovelJunction	1	0.90	19.57	0.00	6.37	0.00	21.92	0.00
22	I4	Intron	0	37.02	21.49	25.72	15.38	7.18	11.47	9.67
23	I4_AR1	ActiveIntronRegion	0	31.51	26.72	23.73	15.89	8.01	12.26	12.26
24	I4_SR2	SilentIntronRegion	0	29.20	27.33	23.90	17.19	2.20	6.66	5.97
25	I4_AR3	ActiveIntronRegion	1	81.54	27.45	35.15	20.92	12.85	16.94	10.08
26	I4_AR4	ActiveIntronRegion	1	86.56	39.70	44.99	29.82	8.27	15.79	12.08
27	I4_SR4	SilentIntronRegion	1	50.54	17.37	33.36	18.11	6.96	14.15	5.79
28	E5_Aa	NovelBoundary	0	40.51	19.44	29.03	24.33	7.22	10.29	13.77
29	ER5a	ExonRegion	0	125.36	181.08	124.88	131.17	70.45	144.34	141.54
30	E5a_E6a	KnownJunction	0	128.35	194.30	159.40	134.26	93.55	154.50	201.23
31	E5a_E7a	NovelJunction	0	21.40	12.35	11.32	10.10	5.69	14.77	7.78
32	E5a_E8a	NovelJunction	1	5.59	9.48	8.91	24.17	2.77	4.98	3.80
33	E6_Aa	NovelBoundary	1	47.73	16.84	61.56	10.51	6.06	9.92	12.01
34	ER6a	ExonRegion	0	89.67	145.61	113.39	113.89	62.34	135.25	125.36
35	E6a_E7a	KnownJunction	0	127.16	139.84	104.87	93.14	74.51	94.84	118.26
36	E6a_E8a	NovelJunction	0	2.50	8.70	7.83	13.52	2.35	11.12	1.45
37	ER7a	ExonRegion	0	185.25	183.11	183.42	146.31	153.57	154.48	205.84
38	E7a_E8a	KnownJunction	0	216.89	227.06	242.43	193.19	117.15	209.15	263.18
39	I7_AR1	ActiveIntronRegion	1	34.71	7.88	18.38	5.58	4.56	2.97	5.30
40	ER8a	ExonRegion	0	220.88	346.67	234.05	298.91	88.47	313.53	232.68
41	E8a_E9a	KnownJunction	0	172.51	377.23	217.62	292.23	94.01	319.40	200.31
42	ER9a	ExonRegion	0	137.35	161.69	143.24	130.01	81.65	157.42	116.97
43	ER9b	ExonRegion	0	3.40	6.07	3.77	6.77	6.25	11.91	6.26