Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 GTDC1 Gene 0 29.29 12.79 20.15 4.79 45.92 20.89 37.65 2 392871 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.35 3 344850 Transcript 0 0 0 0 0 0 0 0 4 241391 Transcript 0 0 0 0 0 0 0 0 5 409214 Transcript 0 0.62 0.19 0.03 0.00 0.21 0.73 0.37 6 392867 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.45 7 392869 Transcript 0 0.38 0.61 0.34 0.00 2.02 0.31 1.18 8 409298 Transcript 0 0.67 1.52 0.86 0.00 4.13 4.21 3.63 9 IG4_AR5 ActiveIntergenicRegion 0 0.00 0.23 0.13 0.95 0.10 13.62 0.00 10 IG4_SR4 SilentIntergenicRegion 0 0.00 0.00 0.28 0.00 0.00 8.86 0.00 11 IG4_AR4 ActiveIntergenicRegion 0 0.00 0.44 0.78 1.57 0.20 12.55 0.00 12 IG4_AR3 ActiveIntergenicRegion 0 0.14 0.07 0.57 1.78 0.07 39.14 0.00 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.35 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 1.23 0.38 0.06 0.00 0.42 1.46 0.74 17 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.45 19 ER4b ExonRegion 0 0.00 0.00 0.00 0.00 0.43 0.00 1.26 20 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER5a ExonRegion 0 0.38 0.61 0.34 0.00 2.02 0.31 1.18 22 ER5b ExonRegion 1 7.85 6.59 4.02 0.84 25.40 6.77 19.18 23 E5a_E6a KnownJunction 0 16.31 10.61 8.87 2.76 23.31 12.92 34.17 24 ER6a ExonRegion 0 21.22 16.90 11.59 4.32 23.02 18.20 40.36 25 E6a_E7a KnownJunction 0 23.98 16.45 14.26 3.93 32.71 23.96 52.61 26 ER7a ExonRegion 0 33.80 23.00 26.21 5.25 54.75 29.73 65.61 27 E7a_E8a KnownJunction 0 32.31 19.41 24.13 2.65 52.68 29.51 45.49 28 ER8a ExonRegion 0 54.58 24.64 37.03 4.45 68.72 43.92 67.62 29 E8a_E9a KnownJunction 0 56.23 21.67 45.15 8.26 45.97 51.29 70.12 30 ER9a ExonRegion 0 50.32 24.08 36.00 9.53 71.46 46.15 64.14 31 E9a_E10a KnownJunction 0 48.68 17.05 38.46 8.70 79.09 46.63 60.42 32 E9a_E11a KnownJunction 0 0.67 1.52 0.86 0.00 4.13 4.21 3.63 33 ER10a ExonRegion 0 51.85 26.36 32.96 7.51 70.30 39.70 52.09 34 E10a_E11a KnownJunction 0 27.59 9.17 15.85 0.00 69.34 13.59 34.52 35 E10a_E13a KnownJunction 1 11.75 4.86 6.54 1.38 12.77 2.49 4.41 36 I10_AR1 ActiveIntronRegion 0 7.63 4.24 4.38 0.00 11.51 1.59 4.59 37 ER11a ExonRegion 0 23.64 8.21 16.32 2.39 54.20 13.03 36.35 38 E11a_E12a KnownJunction 1 13.55 3.73 6.01 1.30 41.43 9.27 29.15 39 E11a_E13a NovelJunction 0 4.79 2.65 4.56 0.00 15.49 1.34 6.97 40 ER12a ExonRegion 0 17.72 6.21 10.45 0.80 33.39 6.87 29.63 41 E12a_E13a KnownJunction 0 25.75 5.39 12.01 0.00 39.24 4.66 29.34 42 ER13a ExonRegion 0 46.04 13.88 26.73 3.39 68.87 8.27 44.19 43 E13a_E14a KnownJunction 0 43.58 14.00 36.47 6.26 79.72 12.01 50.02 44 ER14a ExonRegion 0 57.49 18.39 40.53 5.45 87.00 21.35 52.46 45 E14a_E15a KnownJunction 0 58.30 24.96 34.92 4.20 90.46 28.92 51.09 46 ER15a ExonRegion 0 28.68 10.19 20.43 6.33 49.30 19.97 37.75 47 E15_Da KnownBoundary 0 0.62 0.00 1.25 0.00 2.05 0.00 0.00 48 E15_Db KnownBoundary 0 0.92 0.00 2.27 0.00 4.10 0.00 0.66 49 ER15b ExonRegion 0 4.61 0.00 4.74 0.00 6.07 0.00 3.37 50 ER15c ExonRegion 0 1.84 0.71 2.42 1.09 5.44 2.47 3.00