Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TUBA3D	Gene	0	1.27	1.61	2.51	1.83	1.86	4.03	4.22
2	341158	Transcript	0	1.47	0.00	0.65	0.00	0.00	1.21	1.29
3	410028	Transcript	0	0.60	0.00	1.55	0.00	0.00	0.00	0.00
4	321253	Transcript	0	0	0	0	0	0	0	0
5	409047	Transcript	0	0.77	0.00	1.02	0.00	0.00	0.00	1.35
6	IG45_AR3	ActiveIntergenicRegion	0	0.00	4.86	9.14	1.25	1.62	0.00	2.70
7	ER1a	ExonRegion	0	0.53	0.00	0.78	1.70	1.82	1.69	0.90
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.70	1.66	1.85	0.85	1.26	1.25	3.64
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I2	Intron	0	1.94	1.10	4.79	2.57	3.13	3.23	8.27
12	I2_SR1	SilentIntronRegion	0	1.05	2.07	4.77	2.59	2.80	1.14	9.54
13	I2_AR1	ActiveIntronRegion	0	2.44	0.58	4.81	2.56	3.33	4.40	7.61
14	ER3a	ExonRegion	0	1.05	0.00	2.27	1.27	2.00	7.43	4.10
15	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E4_Aa	NovelBoundary	0	0.95	1.52	5.55	6.12	2.03	0.00	10.36
17	ER4a	ExonRegion	0	1.20	3.01	3.63	3.10	1.71	6.48	5.83
18	E4_Da	KnownBoundary	0	134.39	1179.56	128.05	1184.78	44.79	695.48	1357.82
19	E4a_E4b	KnownJunction	0	0.60	0.00	1.55	0.00	0.00	0.00	0.00
20	ER4b	ExonRegion	0	2.37	1.41	3.89	1.63	3.40	6.38	5.78
21	E4_Ab	KnownBoundary	0	1.57	1.34	2.99	5.17	3.02	10.53	8.08
22	ER4c	ExonRegion	0	1.62	0.00	2.35	0.81	1.95	2.73	2.88
23	E4_Db	NovelBoundary	0	5.19	0.00	3.72	1.68	5.28	0.00	7.65
24	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	I4	Intron	0	1.90	1.23	4.38	1.37	2.93	1.45	7.39
26	I4_SR1	SilentIntronRegion	0	1.91	1.24	4.40	1.37	2.94	1.46	7.42
27	ER5a	ExonRegion	0	0.09	0.49	0.99	0.41	0.58	2.19	2.10
28	E5_Da	KnownBoundary	0	33.40	8.22	52.58	10.24	22.45	4.18	20.64
29	E5a_E5b	KnownJunction	0	1.47	0.00	0.65	0.00	0.00	1.21	1.29
30	ER5b	ExonRegion	0	2.43	1.78	0.96	2.42	0.94	0.62	2.52
31	E5_Ab	KnownBoundary	0	2.72	4.28	1.78	6.66	0.92	6.65	2.15
32	ER5c	ExonRegion	0	1.44	2.48	2.57	2.35	5.48	2.34	6.08
33	E5_Db	KnownBoundary	0	3.96	9.33	7.50	11.03	1.80	11.66	12.55
34	ER5d	ExonRegion	0	2.38	1.50	2.55	1.17	0.70	0.53	3.42
35	ER5e	ExonRegion	0	0.77	0.00	1.02	0.00	0.00	0.00	1.35
36	IG46	Intergenic	0	4.01	3.88	5.73	3.97	6.77	1.70	10.07
37	IG46_SR1	SilentIntergenicRegion	0	4.10	3.96	5.86	4.06	6.92	1.73	10.28