Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPL31	Gene	0	53.19	71.18	39.73	48.83	247.74	59.20	59.15
2	409000	Transcript	0	0	0	0	0	0	0	0
3	264258	Transcript	0	51.23	82.61	55.09	81.88	212.99	86.23	106.14
4	409028	Transcript	1	22.80	15.36	5.73	12.36	178.31	10.34	7.32
5	409320	Transcript	0	0	0	0	0	0	0	0
6	409733	Transcript	1	7.08	33.28	15.75	62.75	21.97	52.16	9.64
7	409650	Transcript	0	1.82	7.17	0.68	1.08	6.39	4.13	0.67
8	409038	Transcript	0	7.66	1.24	1.90	4.21	6.13	2.08	2.43
9	409711	Transcript	0	6.58	4.93	5.49	3.31	11.33	1.83	9.77
10	ER1a	ExonRegion	1	5.00	8.59	7.17	12.38	111.54	4.46	40.95
11	E1_Ab	KnownBoundary	1	2.79	10.46	1.70	10.48	59.08	6.94	38.62
12	E1_Ac	NovelBoundary	1	17.26	20.47	30.80	35.57	382.12	6.43	101.44
13	ER1b	ExonRegion	1	29.28	34.38	60.83	54.24	813.41	11.77	164.20
14	E1a_E1e	KnownJunction	0	424.12	211.64	385.31	224.40	9274.23	131.96	600.67
15	ER1c	ExonRegion	0	256.34	155.06	239.27	158.14	5047.36	109.34	376.27
16	ER1d	ExonRegion	0	7.08	33.28	15.75	62.75	21.97	52.16	9.64
17	E1_Ad	KnownBoundary	1	8.38	30.82	14.15	67.73	11.64	42.56	7.75
18	E1_Ae	KnownBoundary	1	11.88	42.77	14.72	79.84	7.33	89.91	11.72
19	ER1e	ExonRegion	0	60.85	89.68	65.52	138.75	734.02	132.96	74.63
20	ER1f	ExonRegion	0	259.41	233.54	218.01	191.28	2650.48	187.52	361.74
21	E1b_E2a	KnownJunction	1	15.94	181.40	9.81	115.73	35.46	97.04	53.21
22	I1_SR1	SilentIntronRegion	0	17.13	3.89	17.94	6.00	19.30	2.96	12.25
23	ER2a	ExonRegion	0	126.98	78.08	80.01	74.52	798.76	64.49	104.70
24	E2_Da	KnownBoundary	1	46.97	91.98	51.37	105.93	112.96	60.84	117.55
25	E2a_E2b	KnownJunction	0	366.01	312.47	299.65	284.08	4349.56	301.50	459.90
26	ER2b	ExonRegion	0	6.74	7.60	4.66	5.30	9.15	2.31	9.45
27	E2_Db	KnownBoundary	0	8.45	2.76	4.17	3.93	4.06	0.00	7.55
28	ER2c	ExonRegion	0	6.58	4.93	5.49	3.31	11.33	1.83	9.77
29	E2_Ab	KnownBoundary	0	16.91	1.58	7.76	1.68	10.05	2.87	6.95
30	ER2d	ExonRegion	0	140.38	297.75	149.56	192.50	1295.20	270.72	225.34
31	E2_Dc	KnownBoundary	0	95.57	213.93	78.82	80.00	101.64	94.28	87.84
32	E2c_E2c	KnownJunction	0	511.71	1271.35	660.02	927.00	41.93	1472.35	956.95
33	E2c_E3a	KnownJunction	0	2.84	0.00	1.37	4.66	2.21	2.57	2.11
34	E2c_E3b	KnownJunction	0	1.82	7.17	0.68	1.08	6.39	4.13	0.67
35	E2c_E4a	KnownJunction	0	3.50	7.67	3.36	11.95	160.15	10.29	5.62
36	ER2e	ExonRegion	1	101.20	178.82	54.23	53.93	67.93	78.04	71.29
37	E2_Ac	KnownBoundary	1	50.64	34.05	11.90	13.00	16.23	17.77	21.94
38	E2_Dd	KnownBoundary	1	1025.73	2149.06	1149.77	1538.04	653.69	2196.54	2026.72
39	ER2f	ExonRegion	0	740.46	1779.91	849.04	1206.18	532.55	1813.18	1471.88
40	ER2g	ExonRegion	0	747.78	1600.16	841.20	1093.46	2280.67	1628.89	1338.05
41	E2_De	NovelBoundary	1	29.36	10.72	9.10	3.90	42.00	1.02	10.30
42	E2_Dg	NovelBoundary	0	24.55	8.46	21.79	7.59	32.78	3.97	18.30
43	ER2h	ExonRegion	0	202.87	259.98	191.70	155.87	526.40	224.36	244.88
44	ER2i	ExonRegion	0	51.23	82.61	55.09	81.88	212.99	86.23	106.14
45	I2	Intron	0	46.18	16.24	18.93	9.27	49.17	9.10	24.64
46	I2_AR1	ActiveIntronRegion	0	46.28	16.28	18.97	9.29	49.28	9.12	24.69
47	Ix_AR1	ActiveIntronRegion	0	45.41	14.04	2.67	3.02	14.44	2.64	2.35
48	Ix_AR1	ActiveIntronRegion	0	41.14	14.59	11.10	6.40	14.87	4.49	4.35
49	Ix_AR3	ActiveIntronRegion	0	40.46	19.13	10.46	6.34	15.59	5.55	3.88
50	Ix_AR4	ActiveIntronRegion	0	41.46	17.26	10.86	8.48	26.48	5.70	5.15
51	E3_Aa	NovelBoundary	1	49.92	16.81	8.97	10.46	33.27	2.81	5.53
52	E3_Ab	NovelBoundary	1	36.33	12.40	7.67	8.78	23.56	4.80	5.70
53	ER3a	ExonRegion	0	13.58	3.72	4.35	6.72	12.51	2.45	3.07
54	ER3b	ExonRegion	1	55.81	17.57	14.17	9.85	37.56	8.76	5.73
55	E3_Da	NovelBoundary	1	16.06	1.63	5.23	4.44	18.12	1.31	1.92
56	E3_Db	NovelBoundary	1	21.45	8.14	8.94	4.58	15.95	11.31	3.04
57	ER3c	ExonRegion	0	6.55	0.00	0.00	1.25	3.67	1.23	2.10
58	E4_Aa	NovelBoundary	1	43.58	21.41	4.40	2.82	34.67	5.49	3.47
59	ER4a	ExonRegion	1	42.10	23.04	8.10	12.77	196.47	10.39	9.03