Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 GTF2A1L Gene 0 1.45 0.59 8.35 2.92 41.87 10.72 1.39 2 405008 Transcript 0 0 0 0 0 0 0 0 3 402114 Transcript 0 0.00 0.00 0.00 0.00 0.19 0.21 0.00 4 404752 Transcript 0 0.00 1.38 1.30 0.00 40.36 0.64 0.00 5 406226 Transcript 0 0.00 0.00 1.08 1.61 3.38 7.70 0.00 6 394754 Transcript 0 0.00 0.00 1.26 0.00 0.31 1.22 0.00 7 309827 Transcript 0 0.00 0.40 1.81 1.66 20.79 7.36 0.00 8 309835 Transcript 0 0.40 0.00 1.28 0.48 3.58 0.27 0.00 9 394749 Transcript 0 0 0 0 0 0 0 0 10 394751 Transcript 0 0.00 0.00 0.00 0.00 2.08 0.00 0.00 11 403751 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.62 0.00 0.00 13 E1a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Ab NovelBoundary 0 0.00 2.81 2.03 0.00 16.02 0.00 1.28 15 ER2a ExonRegion 0 0.00 1.14 0.38 0.00 11.34 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 0.00 0.83 0.00 3.30 0.00 0.00 17 E2a_E5b KnownJunction 0 0.00 1.63 2.23 0.00 69.39 1.29 0.00 18 ER2b ExonRegion 0 0.00 1.21 2.42 0.00 48.40 0.69 0.00 19 E3_Aa NovelBoundary 0 1.03 4.05 0.76 1.57 0.00 13.53 3.64 20 ER3a ExonRegion 0 0.00 0.00 0.46 0.71 1.49 3.76 0.00 21 E3a_E5b KnownJunction 0 0.00 0.00 1.95 4.12 5.35 19.35 0.00 22 ER4a ExonRegion 0 0.00 0.00 0.90 0.00 0.62 0.91 0.00 23 E4a_E5b KnownJunction 0 0.00 0.00 1.62 0.00 0.00 1.53 0.00 24 ER5a ExonRegion 0 0.00 0.40 1.81 1.66 20.79 7.36 0.00 25 ER5b ExonRegion 0 0.12 0.99 7.07 7.99 43.49 27.34 0.16 26 E5_Ac KnownBoundary 0 0.60 0.00 8.77 11.65 17.01 33.47 1.30 27 ER5c ExonRegion 0 2.06 0.81 13.93 5.60 56.38 18.59 1.90 28 E5a_E6a KnownJunction 0 0.00 0.00 14.61 1.33 42.60 18.30 2.57 29 ER6a ExonRegion 0 1.46 0.00 12.62 4.97 62.93 15.67 3.59 30 E6a_E7a KnownJunction 0 0.00 0.00 14.40 1.65 71.60 15.79 6.13 31 E6a_E10a KnownJunction 0 0.00 0.00 0.62 0.00 1.08 0.00 0.00 32 ER7a ExonRegion 0 2.30 0.95 10.79 3.41 65.12 13.83 2.12 33 E7_Da KnownBoundary 0 0.00 0.00 0.00 0.00 1.08 0.00 0.00 34 E7_Db KnownBoundary 0 1.00 0.00 0.00 0.00 4.59 0.00 0.00 35 ER7b ExonRegion 0 0.77 0.00 0.00 0.00 7.29 2.45 0.00 36 ER7c ExonRegion 0 0.40 0.00 1.28 0.48 3.58 0.27 0.00 37 E7_Dc NovelBoundary 0 556.79 518.94 460.33 607.87 491.58 1241.58 219.72 38 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER10a ExonRegion 0 0.00 0.04 0.43 0.00 2.89 0.00 0.14 42 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 2.10 0.00 0.75 43 ER11a ExonRegion 0 0.00 0.70 2.25 1.53 4.22 1.50 0.30 44 E11a_E12a KnownJunction 0 0.00 0.00 0.69 0.00 4.06 0.00 0.00 45 ER12a ExonRegion 0 0.00 0.00 0.21 0.00 3.22 0.22 0.00 46 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 3.34 1.10 0.00 47 ER13a ExonRegion 0 0.00 0.00 2.23 0.00 2.73 0.95 0.00 48 E13a_E14a KnownJunction 0 0.00 0.00 3.46 0.00 3.37 0.00 0.00 49 ER14a ExonRegion 0 0.00 0.00 2.41 0.16 3.25 1.95 0.00 50 E14a_E15a KnownJunction 0 0.00 0.00 2.95 0.00 3.69 2.36 0.00 51 ER15a ExonRegion 0 0.00 0.00 3.65 0.39 3.65 1.12 0.31 52 E15a_E16a KnownJunction 0 0.00 0.00 2.83 0.00 2.28 2.60 0.89 53 ER16a ExonRegion 0 0.00 0.00 1.60 0.94 3.43 2.62 0.23 54 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 1.13 0.00 0.00 55 E16a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 3.02 0.00 0.00 56 E16a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER17a ExonRegion 0 0.00 0.00 0.19 0.00 1.31 0.68 0.00 58 ER17b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER18a ExonRegion 0 0.00 0.00 0.00 0.00 1.13 0.00 0.00 60 ER19a ExonRegion 0 0.00 0.00 0.00 0.00 0.38 0.42 0.00