Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BRD1	Gene	0	64.04	121.35	69.64	109.37	79.58	142.60	59.60
2	404760	Transcript	0	9.46	15.72	6.77	11.77	10.07	7.36	8.39
3	404034	Transcript	0	8.07	14.06	11.67	23.69	8.47	20.08	4.93
4	342989	Transcript	0	0	0	0	0	0	0	0
5	216267	Transcript	0	0	0	0	0	0	0	0
6	358974	Transcript	0	44.89	63.38	46.05	53.33	33.78	37.95	26.16
7	IG24	Intergenic	0	0.32	2.46	0.77	2.37	0.09	8.46	0.15
8	IG24_AR5	ActiveIntergenicRegion	0	0.50	1.83	0.63	5.34	0.23	15.24	0.29
9	IG24_SR3	SilentIntergenicRegion	0	0.34	4.61	1.46	3.51	0.15	12.59	0.15
10	ER1a	ExonRegion	0	9.46	15.72	6.77	11.77	10.07	7.36	8.39
11	ER2a	ExonRegion	0	7.02	11.39	11.04	19.53	6.73	16.52	3.96
12	E2a_E3b	KnownJunction	0	9.11	16.73	12.30	27.85	10.21	23.64	5.90
13	ER3a	ExonRegion	0	5.68	5.64	7.19	2.48	1.62	1.62	1.58
14	E3_Ab	KnownBoundary	0	9.45	4.70	7.21	1.19	3.37	1.26	1.72
15	ER3b	ExonRegion	0	60.71	165.70	71.96	139.60	87.64	128.46	82.22
16	E3_Ac	KnownBoundary	0	87.51	143.15	87.57	126.27	117.98	137.59	69.99
17	ER3c	ExonRegion	0	104.06	174.81	118.52	135.63	127.42	131.30	77.73
18	E3_Da	KnownBoundary	0	42.31	60.37	53.57	58.52	29.97	38.97	33.79
19	E3a_E3d	KnownJunction	0	89.78	123.45	92.10	106.66	67.57	74.88	52.32
20	E3_Ad	KnownBoundary	0	60.03	87.93	55.14	64.07	49.56	62.47	40.92
21	ER3d	ExonRegion	0	128.33	193.97	139.09	156.70	108.52	128.73	96.47
22	ER3e	ExonRegion	0	106.06	158.89	117.74	134.89	105.52	118.05	76.09
23	E3b_E4a	KnownJunction	0	60.02	85.86	81.90	84.93	66.02	83.51	44.83
24	ER4a	ExonRegion	0	53.08	82.95	61.44	81.89	65.62	96.15	43.95
25	E4a_E5a	KnownJunction	0	53.77	87.67	67.90	99.56	73.68	115.45	55.72
26	ER5a	ExonRegion	0	31.30	112.19	48.34	104.57	57.86	117.71	53.61
27	E5a_E6a	KnownJunction	0	25.62	122.61	50.84	114.30	79.44	115.94	45.57
28	ER6a	ExonRegion	0	56.23	145.95	66.46	132.32	90.89	136.06	77.08
29	E6a_E7a	KnownJunction	0	50.44	149.72	96.58	140.60	111.35	153.54	74.28
30	ER7a	ExonRegion	0	49.88	149.52	81.51	119.98	86.02	146.45	66.89
31	E7a_E8a	KnownJunction	0	41.98	102.46	44.50	98.99	51.85	139.52	37.52
32	E7a_E10a	NovelJunction	1	0.00	10.01	0.00	0.00	0.00	1.39	0.79
33	ER8a	ExonRegion	0	42.79	130.15	55.38	117.36	61.92	153.54	51.09
34	E8a_E9a	KnownJunction	1	25.30	83.73	33.48	85.80	10.81	124.32	11.04
35	E8a_E9b	KnownJunction	0	0.00	3.31	0.00	0.00	0.00	1.02	0.00
36	E8a_E9c	KnownJunction	0	12.65	34.02	21.44	21.16	41.38	23.42	30.00
37	ER9a	ExonRegion	0	47.01	100.78	61.78	100.23	23.84	170.69	27.70
38	E9_Ab	KnownBoundary	1	43.86	64.21	29.98	59.25	16.99	92.57	11.39
39	E9_Ac	KnownBoundary	0	35.58	99.60	23.78	44.89	15.12	70.97	14.45
40	ER9b	ExonRegion	1	55.74	115.89	36.77	73.17	19.35	111.61	19.47
41	ER9c	ExonRegion	0	61.70	137.57	69.39	114.29	89.20	147.39	60.71
42	E9a_E10a	KnownJunction	0	48.93	99.67	51.69	106.63	90.97	134.64	61.14
43	I9_SR2	SilentIntronRegion	0	19.09	11.53	12.41	13.30	10.08	13.08	5.79
44	I9_AR7	ActiveIntronRegion	0	16.84	9.68	9.73	7.39	6.83	10.89	6.17
45	I9_SR6	SilentIntronRegion	0	18.57	20.62	15.27	12.68	8.17	22.57	9.77
46	ER10a	ExonRegion	0	52.93	116.05	56.00	119.09	103.83	142.09	60.47
47	E10a_E11a	KnownJunction	0	43.71	118.20	63.79	147.65	105.97	153.40	76.96
48	I10	Intron	0	17.08	17.86	13.16	14.86	4.14	32.26	7.22
49	I10_SR1	SilentIntronRegion	0	17.48	18.29	13.49	15.21	4.22	33.07	7.40
50	E11_Aa	NovelBoundary	0	9.38	19.97	7.31	17.58	2.05	47.06	6.95
51	ER11a	ExonRegion	0	59.45	156.22	57.78	149.12	93.83	207.54	84.11
52	E11a_E12a	KnownJunction	0	50.70	152.16	43.34	140.41	83.82	187.89	61.91
53	ER12a	ExonRegion	0	47.50	157.22	55.19	147.42	108.06	198.02	83.58
54	E12a_E13a	KnownJunction	0	63.61	151.88	72.17	136.59	124.67	195.29	101.78
55	ER13a	ExonRegion	0	78.74	150.56	78.65	140.58	143.22	185.47	88.25
56	E13a_E14a	KnownJunction	0	95.12	175.44	91.67	153.96	129.95	231.74	89.77
57	ER14a	ExonRegion	0	120.68	124.15	109.09	121.70	120.86	223.50	70.25
58	ER14b	ExonRegion	0	4.44	6.57	6.13	6.18	6.85	9.36	3.01