Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POLR3H	Gene	0	31.17	40.89	60.55	26.97	48.26	19.93	68.10
2	407461	Transcript	0	0.01	0.00	0.01	0.00	0.01	0.00	0.02
3	337566	Transcript	0	0.88	4.78	2.95	4.31	5.37	5.98	2.19
4	355209	Transcript	0	0	0	0	0	0	0	0
5	396504	Transcript	0	6.24	2.92	12.04	3.03	20.84	1.34	7.48
6	216255	Transcript	0	4.50	10.96	6.13	7.44	6.63	6.82	5.47
7	ER1a	ExonRegion	0	0.02	0.00	0.01	0.00	0.02	0.00	0.04
8	E1a_E2d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	2.08	0.00	0.00	0.00
10	ER2b	ExonRegion	0	0.00	0.00	0.00	2.49	0.00	0.00	0.00
11	ER2c	ExonRegion	0	2.24	2.50	4.02	3.96	9.43	1.37	3.12
12	E2_Da	KnownBoundary	0	7.69	4.91	6.28	4.90	8.14	3.62	12.58
13	E2a_E2d	KnownJunction	0	6.24	2.92	12.04	3.03	20.84	1.34	7.48
14	ER2d	ExonRegion	0	11.91	17.73	18.87	14.27	13.74	12.38	26.20
15	E2_Ad	KnownBoundary	0	25.54	33.60	50.89	25.36	35.57	22.78	69.31
16	ER2e	ExonRegion	0	40.96	56.85	74.79	31.71	63.41	35.16	105.56
17	E2b_E3a	KnownJunction	0	51.25	71.14	118.83	42.70	96.08	33.02	176.48
18	E3_Aa	NovelBoundary	0	12.42	13.69	6.08	8.18	1.15	8.74	6.00
19	ER3a	ExonRegion	0	67.00	87.78	155.93	49.34	129.24	55.31	212.91
20	E3_Da	NovelBoundary	0	5.61	7.25	5.40	12.38	0.00	3.14	3.24
21	E3a_E4a	KnownJunction	0	65.78	72.69	136.16	46.19	175.64	34.28	212.49
22	E3a_E5a	KnownJunction	0	0.88	4.78	2.95	4.31	5.37	5.98	2.19
23	I3	Intron	0	14.84	13.81	9.45	17.42	7.23	9.26	4.65
24	I3_AR7	ActiveIntronRegion	0	28.05	31.99	21.34	41.02	15.90	21.92	10.30
25	I3_SR5	SilentIntronRegion	0	23.10	40.47	18.58	47.35	15.20	24.55	8.06
26	I3_AR8	ActiveIntronRegion	0	38.34	35.43	22.96	43.72	18.39	21.06	7.39
27	I3_SR6	SilentIntronRegion	0	17.67	17.94	13.90	26.61	10.66	14.84	7.14
28	E4_Aa	NovelBoundary	0	11.02	35.76	10.25	37.66	13.30	21.57	7.97
29	ER4a	ExonRegion	0	77.50	106.56	167.41	72.04	134.65	59.50	220.44
30	E4_Da	KnownBoundary	0	20.41	46.47	24.90	37.09	20.45	32.59	27.50
31	E4a_E5a	KnownJunction	0	53.21	77.58	165.66	36.41	110.75	46.74	204.61
32	ER4b	ExonRegion	0	9.00	21.73	12.23	14.87	13.13	13.64	10.94
33	E4_Db	NovelBoundary	1	8.86	37.65	7.44	50.66	13.09	13.67	6.92
34	E4b_E5a	NovelJunction	0	7.11	13.85	10.39	2.68	8.94	2.92	11.55
35	I4	Intron	0	7.79	26.82	10.92	31.56	9.68	18.14	7.89
36	I4_SR1	SilentIntronRegion	0	7.82	26.93	10.97	31.69	9.72	18.22	7.93
37	E5_Aa	NovelBoundary	0	16.06	32.79	10.50	26.52	13.90	16.48	8.94
38	ER5a	ExonRegion	0	53.78	74.62	145.71	34.45	121.73	46.88	190.97
39	E5_Da	NovelBoundary	1	20.91	35.23	19.28	38.85	7.63	22.43	7.47
40	E5a_E6a	KnownJunction	0	55.39	65.65	120.35	29.61	123.86	37.81	163.69
41	I5	Intron	0	8.81	28.20	9.94	29.40	11.19	15.14	6.49
42	I5_SR1	SilentIntronRegion	0	10.52	30.01	11.55	31.65	12.06	17.27	7.81
43	I5_SR2	SilentIntronRegion	0	7.52	26.92	8.72	27.74	10.57	13.59	5.53
44	E6_Aa	NovelBoundary	1	11.93	28.82	13.55	39.07	4.77	12.60	7.14
45	ER6a	ExonRegion	0	62.86	102.17	138.17	63.61	128.68	50.25	173.34
46	E6_Da	NovelBoundary	0	7.48	30.29	12.59	26.03	28.49	30.77	0.80
47	E6a_E8a	KnownJunction	0	59.38	67.86	132.28	21.84	96.52	31.14	207.35
48	I6	Intron	0	10.03	20.05	10.75	19.33	9.88	12.15	2.34
49	I6_SR1	SilentIntronRegion	0	6.46	11.85	6.88	14.80	6.55	11.21	1.25
50	I6_AR1	ActiveIntronRegion	0	17.10	28.35	15.92	25.87	13.77	20.64	2.36
51	I6_SR2	SilentIntronRegion	0	10.54	21.49	11.39	20.10	10.46	12.11	2.57
52	ER7a	ExonRegion	0	0.00	0.19	0.04	0.00	0.13	0.00	0.00
53	I7	Intron	1	8.98	15.60	8.32	18.63	8.97	5.36	2.79
54	I7_SR1	SilentIntronRegion	1	9.03	15.69	8.37	18.73	9.02	5.39	2.81
55	E8_Aa	NovelBoundary	0	7.96	26.27	12.34	23.22	15.05	17.50	7.51
56	ER8a	ExonRegion	0	68.37	84.87	112.74	55.34	134.63	35.25	171.82
57	E8_Da	KnownBoundary	0	88.36	101.22	133.31	66.40	103.90	47.03	211.82
58	ER8b	ExonRegion	0	28.39	35.60	53.65	24.16	39.60	16.14	54.03