Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SEC14L2	Gene	0	19.85	9.30	25.61	9.74	2.57	2.85	51.04
2	312932	Transcript	0	4.26	3.95	5.44	0.97	0.52	1.84	12.09
3	403484	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	405717	Transcript	0	8.47	7.45	7.94	6.11	6.19	0.00	27.67
5	ER1a	ExonRegion	0	0.45	0.00	0.04	0.08	0.23	0.00	0.23
6	E1_Ab	KnownBoundary	0	1.64	0.00	0.80	0.00	1.01	0.00	0.00
7	ER1b	ExonRegion	0	11.68	4.72	7.44	2.77	1.58	0.60	8.32
8	E1_Ac	KnownBoundary	0	27.20	9.85	14.96	5.63	0.88	1.39	15.49
9	ER1c	ExonRegion	0	52.94	28.15	53.47	26.93	1.52	5.01	104.87
10	E1a_E2a	KnownJunction	0	23.02	34.94	35.28	23.81	0.00	6.97	79.84
11	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	Ix_SR1	SilentIntronRegion	0	2.26	2.36	6.29	3.76	1.05	0.77	11.38
13	ER2a	ExonRegion	0	59.71	44.37	93.83	44.02	2.18	15.60	187.62
14	E2a_E3a	KnownJunction	0	120.15	36.83	162.47	42.13	5.46	18.01	266.94
15	Ix	Intron	0	3.81	1.85	2.92	1.40	1.86	0.58	13.90
16	Ix_SR1	SilentIntronRegion	0	4.61	1.25	4.34	1.27	0.75	0.56	12.89
17	Ix_AR1	ActiveIntronRegion	0	3.05	3.14	3.21	2.61	0.98	0.47	14.36
18	Ix_SR2	SilentIntronRegion	0	3.91	1.63	2.37	1.10	2.38	0.69	13.24
19	Ix_AR2	ActiveIntronRegion	0	3.61	1.91	2.33	0.86	3.05	0.30	17.93
20	Ix_AR3	ActiveIntronRegion	0	3.79	2.43	1.74	1.25	5.84	1.23	20.96
21	Ix_AR4	ActiveIntronRegion	0	0.88	1.04	1.35	1.25	6.48	1.23	16.19
22	ER3a	ExonRegion	0	127.26	63.09	208.50	58.24	11.04	26.67	395.20
23	E3a_E4a	KnownJunction	0	120.07	76.24	182.65	60.58	17.54	24.36	412.64
24	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	2.68	2.35	1.39	0.48	3.14	1.19	12.87
26	Ix_SR1	SilentIntronRegion	0	2.69	2.36	1.40	0.48	3.16	1.19	12.93
27	ER4a	ExonRegion	0	187.02	78.22	270.65	92.13	21.66	31.96	527.00
28	E4_Da	NovelBoundary	1	77.73	1.10	104.23	0.00	1.01	1.31	8.60
29	E4a_E5a	KnownJunction	0	239.98	71.12	295.70	115.68	15.77	28.84	507.81
30	ER5a	ExonRegion	0	140.10	52.30	182.43	67.38	6.16	19.83	330.88
31	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	Ix_AR2	ActiveIntronRegion	0	3.69	0.57	3.75	0.00	0.75	0.58	23.90
33	ER6a	ExonRegion	0	42.39	3.08	43.13	5.49	9.16	1.25	75.32
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER7a	ExonRegion	0	1.30	0.00	0.29	0.82	0.44	0.00	0.13
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER8a	ExonRegion	0	0.04	0.00	0.33	0.00	0.17	0.00	0.00
38	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	Ix	Intron	0	4.57	2.83	2.44	0.81	3.98	1.05	22.43
40	Ix_SR1	SilentIntronRegion	0	4.65	1.84	2.52	0.30	4.12	1.07	19.27
41	Ix_AR1	ActiveIntronRegion	0	3.26	4.14	1.94	1.47	2.98	1.44	17.19
42	Ix_SR2	SilentIntronRegion	0	6.44	2.79	2.75	0.00	4.52	0.12	33.10
43	Ix_SR3	SilentIntronRegion	0	6.15	4.56	2.39	0.96	3.53	0.74	33.56
44	Ix_AR2	ActiveIntronRegion	0	4.63	2.16	3.04	1.50	5.50	0.94	28.47
45	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.48
46	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER10a	ExonRegion	0	0.94	1.37	0.00	0.01	1.26	0.00	1.24
48	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	Ix	Intron	0	3.07	3.79	3.04	0.00	3.37	0.00	18.51
50	Ix_SR1	SilentIntronRegion	0	3.03	3.95	3.41	0.00	4.36	0.00	19.97
51	Ix_SR2	SilentIntronRegion	0	3.18	3.38	2.26	0.00	1.31	0.00	15.66
52	ER11a	ExonRegion	0	4.20	4.17	4.22	2.29	3.53	0.00	16.50
53	E11_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER11b	ExonRegion	0	8.47	7.45	7.94	6.11	6.19	0.00	27.67
56	E11_Db	NovelBoundary	1	3.74	1.16	4.18	1.68	4.17	0.00	31.77
57	Ix	Intron	0	5.10	2.17	4.84	2.06	4.09	1.26	23.95
58	Ix_SR1	SilentIntronRegion	0	3.76	1.65	3.38	1.06	2.78	1.05	21.27
59	Ix_AR3	ActiveIntronRegion	0	8.25	3.34	7.95	4.45	6.99	1.95	28.17
60	Ix_SR3	SilentIntronRegion	0	4.84	2.38	6.19	1.66	4.79	0.25	33.79
61	Ix	Intron	0	5.90	1.61	3.89	1.92	3.31	0.54	27.38
62	Ix_SR1	SilentIntronRegion	0	4.91	0.49	4.93	1.50	3.47	0.00	25.42
63	Ix_AR1	ActiveIntronRegion	0	6.30	2.04	3.51	2.09	3.26	0.74	28.24
64	ER12a	ExonRegion	0	1.28	0.86	1.82	0.42	0.05	0.52	4.28
65	ER12b	ExonRegion	0	8.07	7.90	10.84	1.87	0.81	3.68	23.95
66	IG45	Intergenic	0	39.18	15.80	76.13	28.28	0.94	7.77	189.15
67	IG45_AR1	ActiveIntergenicRegion	0	43.95	17.79	85.66	31.86	0.90	8.75	212.38