Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CECR2	Gene	0	0.18	0.54	0.26	0.16	149.86	0.87	0.59
2	400585	Transcript	0	0.00	1.15	0.00	0.00	0.91	0.00	0.00
3	342247	Transcript	0	0.00	0.00	0.09	0.00	86.83	0.59	0.49
4	262608	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	400579	Transcript	0	0	0	0	0	0	0	0
6	400573	Transcript	0	1.74	0.97	0.71	0.96	7.20	0.00	0.00
7	355219	Transcript	0	0	0	0	0	0	0	0
8	IG5_SR1	SilentIntergenicRegion	0	0.02	0.00	0.00	0.00	10.43	0.00	0.00
9	IG5_SR2	SilentIntergenicRegion	0	0.00	0.00	0.10	0.00	9.49	0.00	0.00
10	IG5_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	12.90	0.00	0.00
11	IG5_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	8.62	0.00	0.00
12	IG5_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	9.82	0.00	0.00
13	IG5_SR4	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	9.43	0.00	0.00
14	ER1a	ExonRegion	0	0.00	0.67	0.00	0.00	1.83	0.00	0.00
15	E1a_E2c	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67
17	ER2b	ExonRegion	0	0.00	0.61	0.00	0.00	11.74	0.00	0.67
18	ER2c	ExonRegion	0	0.00	1.43	0.00	0.97	93.82	0.00	2.12
19	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	110.12	0.00	0.00
20	ER3a	ExonRegion	0	0.07	0.52	0.00	0.54	128.70	0.76	0.85
21	E3a_E4a	KnownJunction	0	0.78	0.00	0.00	0.00	209.20	1.66	0.54
22	ER4a	ExonRegion	0	0.37	0.00	0.37	0.00	167.69	0.33	2.58
23	E4a_E5a	KnownJunction	0	0.65	0.00	0.00	0.00	163.54	0.00	2.28
24	ER5a	ExonRegion	0	0.50	0.00	0.00	0.00	195.59	1.35	3.30
25	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	153.05	2.63	2.25
26	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	111.31	2.06	2.09
27	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	132.39	1.58	1.69
28	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	133.93	2.30	2.27
29	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	4.43	0.00	0.00
30	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	145.53	1.18	0.87
31	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	10.10	0.00	0.53
32	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	8.25	0.00	0.59
33	ER9a	ExonRegion	0	0.00	0.00	1.03	0.00	148.12	0.20	0.42
34	E9_Ab	KnownBoundary	0	0.00	0.00	0.53	0.00	142.93	0.00	0.57
35	ER9b	ExonRegion	0	0.00	0.34	0.05	0.00	166.83	1.08	1.65
36	E9_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	3.25	0.00	0.00
37	E9a_E11a	KnownJunction	0	0.00	1.37	0.00	0.00	226.29	1.13	0.89
38	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.95	0.00	0.00
39	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E9c_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER9d	ExonRegion	0	0.00	0.00	0.00	0.00	4.05	0.00	0.00
42	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER11a	ExonRegion	0	0.45	1.36	0.64	0.00	203.74	0.82	0.19
45	E11a_E12a	KnownJunction	0	0.00	4.26	0.00	0.00	205.06	0.00	0.00
46	ER12a	ExonRegion	0	0.00	3.29	0.00	0.00	195.00	0.00	0.00
47	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	180.48	0.00	0.00
48	ER13a	ExonRegion	0	0.74	0.45	0.00	0.00	252.00	0.00	0.00
49	E13a_E14a	KnownJunction	0	0.73	0.00	0.00	0.00	133.96	0.00	0.00
50	ER14a	ExonRegion	0	0.56	0.00	0.00	0.00	191.06	0.06	0.00
51	E14_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	23.47	0.00	0.00
52	E14a_E15a	KnownJunction	0	0.85	0.00	0.00	0.00	251.60	0.00	0.00
53	ER14b	ExonRegion	0	0.00	0.00	0.18	0.00	28.13	0.00	0.11
54	E14_Db	NovelBoundary	0	650.77	385.30	529.88	357.03	219.90	326.82	429.24
55	ER15a	ExonRegion	0	0.14	0.24	0.00	0.29	202.50	0.99	0.92
56	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	1.27	82.69	3.64	0.00
57	ER16a	ExonRegion	0	0.12	0.72	0.40	0.58	101.12	2.82	0.49
58	E16a_E17a	KnownJunction	0	0.85	0.00	0.00	0.00	163.05	0.00	0.70
59	ER17a	ExonRegion	0	0.14	0.67	0.18	0.24	159.56	1.24	0.47
60	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	1.22	126.86	1.66	0.00
61	ER18a	ExonRegion	0	0.24	0.84	0.34	0.19	197.73	1.26	0.50
62	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	3.00	0.00	0.00
63	E18a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	273.13	3.22	0.00
64	E19_Aa	NovelBoundary	0	694.00	359.45	455.60	281.75	600.94	236.88	328.89
65	ER19a	ExonRegion	0	3.49	1.94	1.42	1.92	11.41	0.00	0.00
66	ER20a	ExonRegion	0	0.00	0.00	0.37	0.00	214.09	1.03	0.46
67	E20a_E21a	KnownJunction	0	0.00	0.00	0.68	0.00	133.43	0.00	0.00
68	ER21a	ExonRegion	0	0.00	0.00	0.33	0.00	92.19	0.19	0.32
69	E21_Da	KnownBoundary	0	0.00	0.00	0.52	0.00	35.48	0.00	0.00
70	E21_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	5.53	0.00	0.00
71	ER21b	ExonRegion	0	0.00	0.00	0.18	0.00	25.87	0.00	0.00
72	ER21c	ExonRegion	0	0.00	0.79	0.38	0.00	169.46	0.80	0.13
73	IG6	Intergenic	0	0.15	0.44	0.13	0.29	177.91	0.90	0.16
74	IG6_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.83	0.40	148.40	0.00	0.00
75	IG6_AR2	ActiveIntergenicRegion	0	0.00	0.00	1.35	1.87	210.70	0.00	0.00
76	IG6_SR1	SilentIntergenicRegion	0	0.48	1.67	0.09	2.51	284.30	1.80	0.28
77	IG6_AR3	ActiveIntergenicRegion	0	0.34	0.35	0.24	0.27	298.81	1.16	0.42
78	IG6_SR2	SilentIntergenicRegion	0	0.00	0.00	0.59	0.23	503.09	0.19	0.00
79	IG6_AR4	ActiveIntergenicRegion	0	0.07	0.31	0.09	0.05	249.62	0.93	0.14
80	IG6_SR3	SilentIntergenicRegion	0	0.05	0.53	0.08	0.38	44.21	0.83	0.00