Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	USP25	Gene	0	126.50	76.48	181.17	94.92	171.36	67.01	142.96
2	285681	Transcript	0	0.22	5.62	0.00	5.84	0.00	0.93	0.00
3	285679	Transcript	0	185.56	100.02	279.43	93.14	168.12	76.51	262.77
4	351097	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	400183	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.20	0.00
6	ER1a	ExonRegion	0	0.22	5.62	0.00	5.84	0.00	0.93	0.00
7	E1_Ab	KnownBoundary	0	1.65	18.31	0.80	21.94	0.00	6.83	3.61
8	ER1b	ExonRegion	0	4.78	17.17	8.34	16.61	9.52	14.34	8.61
9	E1a_E4a	KnownJunction	0	38.65	58.64	62.51	69.35	70.10	59.74	65.55
10	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.41	0.00
12	ER4a	ExonRegion	0	49.48	92.33	75.50	104.71	88.17	61.30	89.21
13	E4a_E5a	KnownJunction	0	62.29	126.18	85.65	118.06	107.50	69.38	114.18
14	ER5a	ExonRegion	0	95.81	143.52	150.52	151.67	122.60	105.72	174.65
15	E5a_E6a	KnownJunction	0	82.92	121.72	113.12	118.79	139.29	68.90	167.56
16	E5a_E7a	NovelJunction	1	11.03	2.13	21.81	16.47	1.89	5.92	5.78
17	ER6a	ExonRegion	0	111.89	139.22	179.07	142.71	176.77	93.76	205.09
18	E6a_E7a	KnownJunction	0	96.68	115.73	191.08	116.41	163.74	73.54	176.61
19	ER7a	ExonRegion	0	183.48	124.85	269.28	127.17	219.68	87.05	175.79
20	E7a_E8a	KnownJunction	0	185.36	113.33	279.33	123.24	248.44	97.66	174.63
21	E7a_E9a	NovelJunction	1	3.74	4.33	9.33	19.07	0.00	3.94	0.00
22	E8_Aa	NovelBoundary	1	81.66	7.01	103.78	3.33	2.28	0.00	0.63
23	ER8a	ExonRegion	0	219.13	139.53	318.57	147.96	245.24	97.38	218.25
24	E8a_E9a	KnownJunction	0	262.45	128.52	333.85	171.54	236.68	76.67	223.00
25	ER9a	ExonRegion	0	168.34	121.94	268.52	150.59	212.33	63.55	206.22
26	E9a_E10a	KnownJunction	1	124.44	60.14	237.30	78.13	223.38	23.34	196.37
27	E9a_E11a	NovelJunction	1	29.46	20.31	19.06	29.37	0.00	17.58	8.79
28	E9a_E12a	NovelJunction	0	7.21	7.67	13.08	11.13	0.00	3.22	1.40
29	E9a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER10a	ExonRegion	0	104.77	70.45	200.85	78.43	186.48	43.31	185.14
31	E10a_E11a	KnownJunction	0	87.09	61.87	179.66	57.08	173.38	55.42	148.62
32	ER11a	ExonRegion	0	116.45	77.08	226.30	87.79	184.32	49.02	157.21
33	E11a_E12a	KnownJunction	0	110.65	95.52	237.33	100.24	186.91	54.81	135.88
34	ER12a	ExonRegion	0	191.58	109.45	326.77	136.71	207.87	89.80	178.90
35	E12a_E13a	KnownJunction	0	177.06	105.09	324.74	124.16	209.37	93.50	148.62
36	E12a_E14a	NovelJunction	0	21.00	12.06	10.04	4.42	1.06	3.62	5.14
37	E12a_E15a	NovelJunction	0	2.47	9.25	4.90	8.48	0.00	5.90	0.72
38	ER13a	ExonRegion	0	177.17	91.41	324.56	107.64	233.78	71.12	190.84
39	E13a_E14a	KnownJunction	0	165.41	80.23	301.76	89.81	213.42	93.77	197.53
40	ER14a	ExonRegion	0	156.54	105.31	325.12	123.57	243.87	101.27	258.44
41	E14a_E15a	KnownJunction	0	112.64	131.28	262.72	131.31	279.82	106.72	270.89
42	ER15a	ExonRegion	0	156.50	159.99	294.67	182.06	266.58	105.17	323.62
43	E15a_E16a	KnownJunction	0	123.42	139.13	233.29	169.43	287.03	98.41	297.35
44	ER16a	ExonRegion	0	147.34	113.40	256.96	155.88	281.84	82.89	275.68
45	E16a_E17a	KnownJunction	0	134.99	84.83	278.40	155.56	275.39	93.99	226.25
46	ER17a	ExonRegion	0	158.40	122.62	281.13	148.76	281.66	87.43	243.31
47	E17a_E18a	KnownJunction	0	160.99	126.47	256.73	156.10	270.82	71.90	238.17
48	ER18a	ExonRegion	0	170.44	129.90	274.47	161.91	256.62	98.20	258.93
49	E18a_E19a	KnownJunction	0	174.04	126.63	321.45	162.87	285.16	102.96	270.20
50	ER19a	ExonRegion	0	178.30	127.98	275.24	152.50	276.78	108.33	249.40
51	E19a_E20a	KnownJunction	0	204.37	122.37	311.12	148.41	272.97	115.64	274.76
52	E19a_E22a	NovelJunction	1	10.26	7.36	6.35	16.99	2.35	1.45	3.07
53	ER20a	ExonRegion	0	171.10	102.65	237.69	133.92	191.61	92.64	241.82
54	E20a_E21a	KnownJunction	0	11.20	9.67	17.30	7.78	23.28	6.43	21.12
55	E20a_E22a	KnownJunction	0	185.56	100.02	279.43	93.14	168.12	76.51	262.77
56	E20a_E23a	NovelJunction	0	5.44	10.75	12.62	19.64	0.00	13.48	0.89
57	ER21a	ExonRegion	0	11.97	8.49	24.98	5.96	21.30	6.85	18.64
58	E21a_E22a	KnownJunction	0	15.52	11.27	34.53	10.24	25.20	13.96	32.78
59	ER22a	ExonRegion	0	149.03	77.14	213.15	96.21	236.19	60.85	203.26
60	E22a_E23a	KnownJunction	0	110.47	72.88	205.61	91.46	170.80	69.06	164.15
61	ER23a	ExonRegion	0	128.80	77.78	203.48	102.82	168.08	64.75	164.67
62	E23a_E24a	KnownJunction	0	141.66	85.67	221.29	143.42	160.91	62.10	160.34
63	ER24a	ExonRegion	0	152.42	84.58	242.60	122.69	174.37	84.87	171.62
64	E24a_E25a	KnownJunction	0	138.93	72.48	226.16	94.55	196.41	72.57	160.68
65	ER25a	ExonRegion	0	202.99	79.53	249.21	122.12	250.62	89.27	162.62
66	E25a_E26a	KnownJunction	0	220.06	89.11	252.47	130.96	283.57	91.66	144.69
67	ER26a	ExonRegion	0	349.73	130.76	325.99	168.47	394.58	139.66	208.86
68	E26a_E27a	KnownJunction	0	432.94	120.38	369.35	185.60	450.91	149.89	265.13
69	ER27a	ExonRegion	0	93.28	33.84	107.72	49.45	116.33	48.21	63.52
70	IG59_AR2	ActiveIntergenicRegion	0	4.34	6.26	4.41	3.52	8.47	3.55	9.24
71	IG59_AR3	ActiveIntergenicRegion	0	10.26	6.76	7.06	2.57	5.17	7.61	6.05
72	IG59_SR3	SilentIntergenicRegion	0	8.63	7.63	7.20	6.03	4.46	4.58	8.28