Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DOPEY2	Gene	0	29.82	19.99	19.31	7.91	23.69	5.12	26.20
2	399151	Transcript	0	0.77	0.00	0.00	0.00	0.00	0.00	0.90
3	270190	Transcript	0	0	0	0	0	0	0	0
4	IG24_SR1	SilentIntergenicRegion	0	5.30	8.20	0.79	2.06	0.24	2.44	0.84
5	IG24_AR1	ActiveIntergenicRegion	0	7.97	18.86	1.64	2.72	0.42	2.59	5.52
6	IG24_AR2	ActiveIntergenicRegion	0	7.86	15.76	3.54	2.54	0.19	0.87	3.34
7	IG24_SR3	SilentIntergenicRegion	0	5.96	24.65	2.19	1.69	0.17	2.05	4.24
8	IG24_AR3	ActiveIntergenicRegion	0	4.98	17.96	2.06	2.05	0.57	1.34	1.94
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	8.61	12.31	7.69	5.49	6.03	3.48	9.13
12	E2a_E3a	KnownJunction	0	14.05	14.97	8.39	4.14	9.68	1.15	13.76
13	ER3a	ExonRegion	0	14.05	24.83	11.16	9.68	10.11	2.14	19.67
14	E3a_E4a	KnownJunction	1	16.39	31.13	6.19	13.03	10.35	2.71	21.08
15	ER4a	ExonRegion	0	12.18	19.96	10.82	11.79	8.71	2.42	17.97
16	E4a_E5a	KnownJunction	0	11.17	16.79	9.79	10.67	9.73	1.31	18.27
17	ER5a	ExonRegion	0	20.23	15.19	15.67	9.58	12.29	5.79	18.79
18	E5a_E6a	KnownJunction	0	8.65	15.42	17.66	8.51	14.15	7.29	17.64
19	ER6a	ExonRegion	0	32.38	26.31	23.47	9.76	15.88	10.19	19.55
20	E6a_E7a	KnownJunction	1	51.02	29.11	35.22	7.02	24.34	10.53	21.86
21	ER7a	ExonRegion	0	23.07	18.19	18.65	3.12	12.21	8.57	15.76
22	E7a_E8a	KnownJunction	0	27.69	12.06	13.21	2.76	13.85	0.00	20.21
23	E7a_E9a	NovelJunction	0	3.05	5.94	0.59	8.29	0.00	0.00	0.82
24	ER8a	ExonRegion	0	27.23	10.27	21.73	1.72	17.46	6.50	16.17
25	E8a_E9a	KnownJunction	0	39.20	9.83	27.84	0.00	22.18	4.77	23.72
26	ER9a	ExonRegion	0	38.77	15.26	26.48	9.94	18.29	4.06	23.05
27	E9a_E10a	KnownJunction	0	38.19	15.26	27.58	16.96	21.74	1.47	19.36
28	ER10a	ExonRegion	0	47.97	21.14	30.42	12.68	23.77	2.30	22.07
29	E10a_E11a	KnownJunction	0	28.46	25.35	28.86	9.75	20.13	4.64	19.96
30	ER11a	ExonRegion	0	34.18	18.08	32.15	4.35	14.69	1.49	21.34
31	E11a_E12a	KnownJunction	0	33.61	20.91	28.57	4.06	11.37	2.71	22.73
32	ER12a	ExonRegion	0	24.81	23.15	22.87	4.90	14.32	5.52	17.11
33	E12a_E13a	KnownJunction	0	21.53	18.42	23.24	1.06	14.22	2.71	14.75
34	ER13a	ExonRegion	0	16.02	23.03	14.43	9.16	15.07	4.37	18.33
35	E13a_E14a	KnownJunction	0	13.32	23.59	10.95	6.64	19.30	1.47	24.48
36	ER14a	ExonRegion	0	17.70	18.61	13.35	6.17	16.27	2.35	23.39
37	E14a_E15a	KnownJunction	0	39.74	12.72	21.05	4.85	23.31	4.34	26.08
38	ER15a	ExonRegion	0	37.94	13.26	22.31	8.67	21.25	5.01	29.60
39	E15a_E16a	KnownJunction	0	21.70	16.71	15.42	15.06	16.64	9.33	24.25
40	ER16a	ExonRegion	0	16.60	19.09	14.16	5.36	14.23	5.61	22.71
41	E16a_E17a	KnownJunction	0	14.97	26.35	9.24	8.75	13.92	7.26	25.15
42	ER17a	ExonRegion	0	29.86	28.69	22.37	4.91	18.77	5.71	28.44
43	E17a_E18a	KnownJunction	0	30.99	30.42	22.00	6.12	14.04	0.00	30.80
44	ER18a	ExonRegion	0	24.10	29.11	15.91	5.73	16.13	3.53	24.25
45	E18a_E19a	KnownJunction	0	31.18	22.70	15.39	9.27	17.20	1.61	40.53
46	ER19a	ExonRegion	0	21.32	23.79	13.51	9.24	15.85	4.31	23.79
47	E19a_E20a	KnownJunction	0	16.32	17.23	22.56	4.88	27.89	0.00	39.58
48	ER20a	ExonRegion	0	40.27	18.21	27.77	8.09	37.56	5.30	44.72
49	E20a_E21a	KnownJunction	0	50.45	12.74	33.63	10.43	9.34	7.16	34.18
50	ER21a	ExonRegion	0	35.56	22.93	27.42	7.61	22.74	8.19	32.94
51	E21a_E22a	KnownJunction	0	22.93	13.87	18.78	3.33	18.30	7.26	16.09
52	ER22a	ExonRegion	0	17.23	22.13	12.12	6.96	19.25	4.12	21.03
53	E22a_E23a	KnownJunction	0	22.23	26.01	18.93	10.43	30.71	6.08	22.31
54	ER23a	ExonRegion	0	35.55	22.77	18.37	8.10	25.62	7.15	25.80
55	E23a_E24a	KnownJunction	0	53.46	22.28	26.10	5.80	16.02	15.95	29.34
56	ER24a	ExonRegion	0	53.47	23.65	30.06	3.25	26.91	11.58	35.61
57	E24a_E25a	KnownJunction	0	34.95	20.44	23.96	3.74	37.48	4.42	32.70
58	ER25a	ExonRegion	0	53.16	19.52	35.66	8.88	36.92	6.50	31.11
59	E25a_E26a	KnownJunction	0	55.29	14.40	39.48	6.56	32.97	4.64	31.89
60	ER26a	ExonRegion	0	46.83	16.07	35.08	7.59	22.00	4.30	25.97
61	E26a_E27a	KnownJunction	1	35.20	19.73	30.92	10.35	15.15	1.66	12.47
62	ER27a	ExonRegion	0	42.06	21.10	26.82	6.46	24.23	4.41	31.91
63	E27a_E28a	KnownJunction	0	50.47	23.36	30.16	7.45	25.04	2.84	41.92
64	ER28a	ExonRegion	0	35.41	19.56	19.36	6.19	30.53	6.27	32.33
65	E28a_E29a	KnownJunction	1	34.73	19.49	10.13	2.76	31.84	12.41	27.79
66	ER29a	ExonRegion	0	46.57	19.17	15.96	6.95	32.11	6.46	43.37
67	E29a_E30a	KnownJunction	0	34.61	15.87	13.12	6.66	24.39	5.92	37.66
68	ER30a	ExonRegion	0	45.42	18.54	23.64	9.72	43.29	6.59	48.15
69	E30_Da	NovelBoundary	1	4.14	1.39	1.72	1.68	7.35	0.00	7.74
70	E30a_E31a	KnownJunction	0	70.72	30.40	32.33	10.00	34.23	8.12	63.30
71	ER31a	ExonRegion	0	55.15	26.79	24.92	11.10	36.87	4.51	43.59
72	E31a_E32a	KnownJunction	0	41.84	19.20	26.21	12.38	33.73	3.11	33.54
73	ER32a	ExonRegion	0	60.55	22.42	33.03	10.09	40.72	3.78	65.85
74	E32a_E33a	KnownJunction	0	45.63	10.75	18.77	5.09	28.98	0.00	47.58
75	ER33a	ExonRegion	0	40.00	8.54	27.51	4.86	38.74	3.79	51.04
76	E33a_E34a	KnownJunction	0	32.08	8.49	22.07	4.33	22.29	7.48	43.67
77	ER34a	ExonRegion	0	36.10	9.09	23.13	2.98	22.89	3.61	49.40
78	E34a_E35a	KnownJunction	0	35.17	7.83	26.21	0.00	33.84	3.99	47.09
79	ER35a	ExonRegion	0	27.53	14.91	25.18	7.14	33.76	8.25	42.79
80	E35a_E36a	KnownJunction	0	23.65	13.77	15.26	5.55	20.98	6.51	28.59
81	ER36a	ExonRegion	0	21.97	15.74	17.18	7.03	28.08	4.90	29.27
82	E36a_E37a	KnownJunction	0	22.10	17.47	14.50	9.24	30.64	2.97	22.53
83	ER37a	ExonRegion	0	48.33	19.01	26.07	9.19	51.38	8.52	22.87
84	ER37b	ExonRegion	0	2.31	0.00	0.00	0.00	0.00	0.00	2.70