Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF335	Gene	0	75.38	295.11	99.65	386.61	38.56	389.54	99.17
2	243961	Transcript	0	3.95	70.00	9.11	57.00	0.00	56.33	9.44
3	322927	Transcript	0	42.37	279.39	63.71	303.90	21.06	329.11	71.96
4	IG30_AR1	ActiveIntergenicRegion	0	5.00	6.49	3.18	6.64	1.68	17.53	1.66
5	ER1a	ExonRegion	0	11.47	94.53	19.72	115.83	6.27	103.76	15.71
6	E1a_E2a	KnownJunction	0	23.27	199.72	37.32	233.17	3.07	223.56	35.31
7	ER2a	ExonRegion	0	15.45	145.09	19.38	138.04	5.01	133.87	15.36
8	E2_Da	KnownBoundary	0	5.32	102.25	9.31	85.63	4.06	91.98	10.96
9	E2a_E2b	KnownJunction	0	7.89	140.00	18.22	114.00	0.00	112.67	18.87
10	E2_Ab	KnownBoundary	0	18.24	67.89	15.45	82.22	5.97	81.52	18.99
11	ER2b	ExonRegion	0	23.98	187.57	25.47	188.54	11.34	209.16	29.41
12	ER2c	ExonRegion	0	34.30	173.29	36.82	214.41	15.16	237.38	41.74
13	E2_Db	KnownBoundary	0	42.61	170.24	48.24	268.64	15.01	279.07	57.40
14	E2b_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2d	ExonRegion	0	27.84	210.72	40.35	246.34	16.10	269.27	47.46
16	E2c_E3a	KnownJunction	0	30.56	241.93	41.66	236.64	19.48	271.21	46.32
17	E2c_E4a	NovelJunction	0	0.00	15.34	1.67	15.01	0.00	24.63	4.08
18	E2c_E5a	NovelJunction	0	1.00	2.63	0.62	6.72	0.00	13.16	0.00
19	ER3a	ExonRegion	0	46.89	287.44	62.23	345.67	22.50	356.00	70.89
20	E3a_E4a	KnownJunction	0	59.55	288.01	74.19	333.11	20.89	351.26	85.19
21	E3a_E5a	NovelJunction	1	0.00	0.00	0.65	5.55	0.00	13.02	0.00
22	ER4a	ExonRegion	0	49.83	303.53	75.83	338.52	28.11	399.94	93.51
23	E4a_E5a	KnownJunction	0	53.29	349.59	83.13	347.93	38.01	411.14	83.90
24	ER5a	ExonRegion	0	48.73	322.51	84.31	347.44	30.52	378.64	90.18
25	E5a_E6a	KnownJunction	0	44.40	288.25	94.37	315.83	9.64	313.18	97.77
26	ER6a	ExonRegion	0	38.60	314.35	55.59	338.96	14.01	331.32	74.94
27	E6a_E7a	KnownJunction	0	74.62	251.63	97.42	286.95	20.70	256.77	75.24
28	E6a_E8a	NovelJunction	1	1.00	1.55	1.21	9.43	0.00	24.25	0.00
29	ER6b	ExonRegion	0	64.60	265.49	88.38	291.12	16.79	270.78	77.58
30	ER7a	ExonRegion	0	51.14	164.53	63.22	228.55	22.00	211.79	51.65
31	E7a_E8a	KnownJunction	0	51.49	151.77	52.01	215.48	28.29	215.74	49.27
32	ER8a	ExonRegion	0	61.34	232.32	80.41	287.06	27.90	304.40	68.89
33	E8a_E9a	KnownJunction	0	73.64	316.39	119.73	368.17	50.58	383.21	95.05
34	ER9a	ExonRegion	0	69.66	331.74	102.09	402.71	40.03	387.22	101.36
35	E9a_E10a	KnownJunction	0	93.98	293.32	150.03	389.73	47.81	381.90	129.33
36	ER10a	ExonRegion	0	106.34	336.13	124.86	466.56	46.36	428.78	136.88
37	E10a_E11a	KnownJunction	0	89.96	213.22	83.75	325.20	28.65	268.51	81.60
38	E10a_E12a	NovelJunction	1	0.00	2.31	0.00	15.06	0.00	16.48	0.00
39	E11a_E12a	KnownJunction	0	78.54	203.68	109.59	255.25	47.28	244.68	81.95
40	ER11a	ExonRegion	0	123.72	300.65	136.62	414.78	50.55	362.83	118.83
41	ER12a	ExonRegion	0	170.78	386.25	212.37	560.76	92.20	549.72	184.07
42	E12a_E13a	KnownJunction	0	220.29	375.97	229.25	603.94	105.14	540.98	181.31
43	ER13a	ExonRegion	0	235.71	432.90	246.22	624.32	103.22	564.75	182.69
44	E13a_E14a	KnownJunction	0	188.23	464.79	204.53	604.21	69.41	550.41	175.52
45	ER14a	ExonRegion	0	181.86	485.14	207.27	621.19	85.90	541.48	189.49
46	E14a_E15a	KnownJunction	0	121.57	415.82	138.63	479.81	75.59	393.82	139.26
47	ER15a	ExonRegion	0	79.86	259.74	92.10	351.41	37.51	340.51	90.80
48	E15a_E16a	KnownJunction	0	80.75	195.09	93.62	300.79	30.55	296.97	67.63
49	E15a_E18a	NovelJunction	1	0.00	3.10	0.00	22.19	0.00	36.05	0.00
50	ER16a	ExonRegion	0	60.25	204.51	80.41	254.09	27.23	220.80	66.15
51	E16a_E17a	KnownJunction	0	26.29	168.01	54.12	179.21	29.85	109.99	58.73
52	E16a_E18a	NovelJunction	1	2.85	50.02	9.77	84.44	0.00	134.64	2.74
53	E17_Aa	NovelBoundary	0	25.87	58.56	16.99	49.74	6.36	70.32	15.18
54	ER17a	ExonRegion	0	55.13	184.43	73.79	215.51	37.35	154.73	77.56
55	E17a_E18a	KnownJunction	0	63.37	191.18	86.11	191.15	31.42	161.47	90.47
56	E18_Aa	NovelBoundary	1	34.88	41.27	37.00	17.72	1.96	21.98	6.79
57	ER18a	ExonRegion	0	75.86	306.85	107.66	418.44	44.56	384.83	124.99
58	E18a_E19a	KnownJunction	0	99.69	341.79	147.43	488.26	46.31	483.20	164.24
59	E18a_E20a	NovelJunction	1	2.54	8.22	0.80	20.72	0.00	26.67	0.79
60	E19_Aa	NovelBoundary	1	46.65	64.29	54.42	94.06	2.21	120.09	9.11
61	ER19a	ExonRegion	0	109.54	414.33	179.08	577.97	67.88	541.03	170.73
62	E19a_E20a	KnownJunction	0	114.03	413.91	187.02	566.91	66.12	631.91	143.30
63	ER20a	ExonRegion	0	100.33	346.92	138.97	459.92	40.51	453.88	109.78
64	E20a_E21a	KnownJunction	0	63.72	249.05	91.94	269.50	30.48	347.49	67.70
65	I20	Intron	0	18.75	26.25	17.51	31.66	2.52	20.63	5.94
66	I20_SR1	SilentIntronRegion	0	18.82	26.34	17.57	31.77	2.53	20.70	5.96
67	ER21a	ExonRegion	0	71.09	317.34	112.61	451.27	31.58	464.82	100.82
68	E21a_E22a	KnownJunction	0	53.12	283.05	82.56	384.23	28.08	361.21	79.93
69	ER22a	ExonRegion	0	87.15	308.32	120.43	449.87	40.56	497.05	109.34
70	E22a_E23a	KnownJunction	0	59.43	267.26	81.15	403.87	39.40	429.20	90.70
71	ER23a	ExonRegion	0	67.42	292.21	89.21	435.68	44.97	463.70	121.06
72	E23a_E24a	KnownJunction	0	71.70	303.62	112.99	477.29	53.34	575.95	152.27
73	ER24a	ExonRegion	0	70.52	345.47	101.95	505.82	45.75	568.33	126.07
74	E24_Da	NovelBoundary	0	23.50	51.62	24.33	74.50	5.23	55.18	17.10
75	E24a_E25a	KnownJunction	0	73.20	362.36	118.66	499.42	47.95	543.63	111.11
76	I24_AR1	ActiveIntronRegion	0	17.15	39.05	14.84	45.12	2.10	40.46	10.25
77	ER25a	ExonRegion	0	91.31	398.36	118.06	558.54	65.84	579.28	155.33
78	E25a_E26a	KnownJunction	0	106.38	455.81	134.56	623.20	63.49	641.83	195.82
79	ER26a	ExonRegion	0	97.36	442.12	134.54	595.41	72.31	686.45	188.62
80	E26a_E27a	KnownJunction	0	86.40	390.58	114.04	562.52	71.00	609.94	148.27
81	E27_Aa	NovelBoundary	1	35.98	12.27	48.90	20.75	2.24	23.10	4.08
82	ER27a	ExonRegion	0	91.17	387.05	103.09	575.05	61.91	609.17	126.45
83	E27a_E28a	KnownJunction	0	85.07	383.04	99.56	597.82	47.21	605.03	126.39
84	ER28a	ExonRegion	0	46.12	218.19	56.40	309.94	24.27	358.35	65.08
85	IG29	Intergenic	0	5.50	8.26	7.84	11.92	1.23	10.09	1.20
86	IG29_SR2	SilentIntergenicRegion	0	4.15	9.80	6.14	13.06	1.08	11.35	0.91
87	IG29_AR1	ActiveIntergenicRegion	0	8.07	7.29	5.17	12.94	0.81	4.44	4.05
88	IG29_SR1	SilentIntergenicRegion	0	7.24	6.49	10.19	10.70	1.46	8.81	1.52