Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PPP4R1L	Gene	0	5.78	8.76	5.89	5.45	4.78	3.33	3.20
2	244064	Transcript	0	1.80	0.38	0.00	0.01	0.17	0.00	0.80
3	244070	Transcript	0	0.75	0.00	0.42	0.40	0.00	1.79	0.00
4	334187	Transcript	0	0.82	0.97	1.27	0.89	1.03	0.23	0.38
5	400346	Transcript	0	0.00	0.00	0.34	0.83	0.13	0.41	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.30	4.01	0.00	0.16
7	ER2a	ExonRegion	0	0.09	0.51	0.39	3.38	14.78	0.00	1.32
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	2.35	9.33	2.86	5.95	3.81	0.93	2.74
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER4a	ExonRegion	0	15.35	46.48	17.66	21.18	16.80	8.32	12.91
12	E4a_E5a	KnownJunction	0	41.14	55.80	44.30	39.93	46.71	16.56	25.31
13	E5_Aa	NovelBoundary	0	20.48	0.00	25.32	0.00	0.00	0.00	0.00
14	ER5a	ExonRegion	0	44.74	65.23	43.92	38.92	25.11	27.58	22.04
15	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E5a_E8a	KnownJunction	0	49.50	65.55	61.07	39.80	23.72	38.32	31.89
17	ER6a	ExonRegion	0	3.60	0.75	0.01	0.01	0.34	0.00	1.61
18	ER7a	ExonRegion	0	0.00	0.00	0.34	0.83	0.13	0.41	0.00
19	ER8a	ExonRegion	0	34.62	41.10	33.98	27.53	23.27	19.82	17.35
20	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER9a	ExonRegion	0	13.45	12.88	15.54	12.77	11.24	10.18	7.37
22	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER10a	ExonRegion	0	2.17	3.50	1.82	1.07	5.60	0.92	1.70
24	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER11a	ExonRegion	0	0.32	0.00	0.00	0.00	0.21	0.00	0.00
26	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	Ix_AR1	ActiveIntronRegion	0	5.47	8.98	6.81	2.05	5.83	0.92	5.00
28	ER12a	ExonRegion	0	0.14	0.00	0.08	0.29	0.00	0.81	0.12
29	E12_Da	KnownBoundary	0	0.00	0.00	0.00	1.52	0.00	4.02	0.00
30	ER12b	ExonRegion	0	0.77	0.00	0.49	1.25	0.00	3.68	0.00
31	E12_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E12b_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER12c	ExonRegion	0	0.75	0.00	0.42	0.40	0.00	1.79	0.00
34	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	Ix_AR2	ActiveIntronRegion	0	11.74	5.32	6.38	1.90	1.94	0.64	1.24
45	ER18a	ExonRegion	0	1.35	0.01	3.20	0.00	2.83	0.00	0.03
46	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER19a	ExonRegion	0	3.47	0.93	4.89	2.90	2.82	0.00	1.53
48	E19_Da	NovelBoundary	0	22.40	20.02	25.77	10.35	13.99	12.52	8.81
49	E19a_E20a	KnownJunction	0	0.00	0.00	2.28	1.03	0.92	0.00	0.00
50	E20_Aa	NovelBoundary	0	9.96	7.86	1.15	3.09	3.97	2.63	3.22
51	ER20a	ExonRegion	0	8.22	14.51	10.02	10.27	9.85	3.75	4.56