Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DIDO1	Gene	0	58.93	82.92	57.37	78.47	74.19	85.56	63.28
2	370371	Transcript	0	0	0	0	0	0	0	0
3	266071	Transcript	0	0	0	0	0	0	0	0
4	395335	Transcript	0	5.59	4.92	3.13	2.04	1.18	1.54	1.90
5	266070	Transcript	0	0.00	0.73	1.22	0.00	0.00	1.23	1.35
6	395340	Transcript	1	33.65	20.41	23.43	26.79	33.47	12.71	8.28
7	395343	Transcript	0	0	0	0	0	0	0	0
8	354665	Transcript	1	24.46	82.51	28.13	81.35	15.25	42.85	18.55
9	370368	Transcript	0	0	0	0	0	0	0	0
10	370366	Transcript	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	26.27	29.18	31.34	38.62	98.38	31.50	31.15
12	E1_Da	NovelBoundary	1	10.60	10.69	12.76	22.43	13.12	27.20	20.32
13	E1a_E3a	KnownJunction	1	4.87	25.51	13.69	14.06	10.26	3.78	15.59
14	I1_SR2	SilentIntronRegion	0	9.00	6.43	9.32	2.74	17.21	1.69	3.19
15	I1_AR4	ActiveIntronRegion	0	3.18	6.86	1.45	3.65	16.31	1.23	2.02
16	I1_AR5	ActiveIntronRegion	0	6.93	7.60	6.61	1.65	17.20	0.81	3.68
17	I1_SR3	SilentIntronRegion	0	15.93	5.43	9.96	1.73	18.49	1.04	3.89
18	I1_SR4	SilentIntronRegion	0	10.06	5.46	10.40	1.22	19.76	0.41	4.14
19	I1_AR7	ActiveIntronRegion	0	36.30	13.17	23.14	5.50	39.71	1.95	7.03
20	I1_AR8	ActiveIntronRegion	0	29.67	14.85	12.91	4.99	27.09	2.45	6.22
21	I1_AR9	ActiveIntronRegion	0	23.69	12.96	10.84	2.49	24.16	2.45	6.52
22	I1_AR10	ActiveIntronRegion	0	21.13	10.93	10.27	1.04	24.97	1.23	6.75
23	I1_AR11	ActiveIntronRegion	0	16.42	6.97	9.31	2.07	14.53	0.95	2.72
24	I1_AR12	ActiveIntronRegion	0	17.86	15.16	17.33	3.78	14.10	3.55	9.07
25	I1_AR13	ActiveIntronRegion	0	16.40	6.94	19.26	2.94	12.31	1.61	7.59
26	ER2a	ExonRegion	0	0.07	0.33	0.43	0.34	1.62	0.00	0.18
27	E2_Ac	KnownBoundary	1	15.00	43.90	12.50	19.67	33.22	9.81	11.16
28	ER2b	ExonRegion	1	6.08	22.59	5.57	9.98	15.50	3.01	3.80
29	ER2c	ExonRegion	0	18.20	66.02	19.86	54.36	25.08	30.34	14.00
30	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E2b_E3a	KnownJunction	0	29.71	93.34	35.26	95.36	16.51	50.14	21.58
32	ER2d	ExonRegion	0	19.21	71.68	21.00	67.34	14.00	35.55	15.52
33	I2	Intron	0	21.56	6.89	14.60	3.03	11.74	1.48	5.43
34	I2_AR1	ActiveIntronRegion	0	21.05	6.94	13.24	3.20	7.92	1.04	4.51
35	I2_AR2	ActiveIntronRegion	0	18.78	7.29	15.77	4.59	12.59	1.28	7.18
36	I2_SR3	SilentIntronRegion	0	35.41	7.67	21.73	4.32	18.18	0.03	7.97
37	I2_AR3	ActiveIntronRegion	0	46.15	5.34	29.05	2.49	15.63	1.23	7.81
38	I2_AR4	ActiveIntronRegion	0	30.13	7.07	18.89	4.12	14.09	0.94	7.62
39	I2_SR4	SilentIntronRegion	0	18.48	12.54	20.88	1.95	11.92	0.00	6.93
40	I2_AR5	ActiveIntronRegion	0	27.82	9.35	26.95	4.72	15.92	2.68	7.16
41	I2_SR5	SilentIntronRegion	0	15.95	6.60	10.82	1.84	9.96	0.86	4.55
42	I2_AR6	ActiveIntronRegion	0	32.82	9.99	19.30	5.62	14.16	2.48	8.10
43	I2_AR7	ActiveIntronRegion	0	14.22	5.92	14.31	6.55	12.76	4.90	5.82
44	I2_SR6	SilentIntronRegion	0	20.45	6.76	13.13	2.86	12.39	1.60	5.25
45	I2_AR8	ActiveIntronRegion	0	26.48	8.80	14.45	1.61	13.69	3.39	4.47
46	I2_SR7	SilentIntronRegion	0	41.20	4.11	21.29	1.45	21.79	1.31	6.14
47	I2_AR9	ActiveIntronRegion	0	17.89	3.32	13.32	1.39	9.23	2.95	3.74
48	E3_Aa	NovelBoundary	1	20.93	7.33	10.20	0.00	5.39	0.00	4.64
49	ER3a	ExonRegion	0	67.24	167.88	81.51	143.25	129.43	109.36	68.88
50	E3_Da	NovelBoundary	1	31.13	7.46	31.23	0.00	17.61	3.27	5.50
51	E3a_E4a	KnownJunction	0	52.14	242.25	72.21	207.87	261.53	161.33	101.81
52	I3	Intron	0	15.84	6.88	11.09	1.48	9.69	1.67	3.68
53	I3_SR1	SilentIntronRegion	0	22.99	9.18	14.84	1.62	10.96	2.40	3.41
54	I3_AR1	ActiveIntronRegion	0	15.31	6.34	8.68	1.14	11.00	2.80	3.96
55	ER4a	ExonRegion	0	64.53	205.27	62.61	134.31	138.28	119.63	82.33
56	E4a_E5a	KnownJunction	0	157.80	248.19	144.31	205.30	319.37	172.62	152.96
57	ER5a	ExonRegion	0	187.52	346.01	185.14	235.58	319.20	205.62	158.49
58	E5a_E6a	KnownJunction	0	2.72	6.73	3.94	3.47	0.99	0.00	2.92
59	E5a_E7a	KnownJunction	0	132.47	222.23	138.76	171.49	269.81	154.90	121.56
60	ER6a	ExonRegion	0	10.83	6.91	4.57	2.66	1.39	2.96	2.78
61	E6a_E7a	KnownJunction	0	3.22	1.13	0.89	0.00	1.15	1.66	0.00
62	ER7a	ExonRegion	0	123.31	238.23	140.47	196.11	225.45	127.31	130.39
63	E7_Da	NovelBoundary	1	16.04	16.87	15.26	8.56	3.39	1.58	3.00
64	E7a_E8a	KnownJunction	0	102.08	204.71	126.43	173.82	312.87	105.24	138.17
65	I7	Intron	1	14.71	21.89	12.37	6.03	3.58	4.46	2.25
66	I7_AR1	ActiveIntronRegion	1	14.11	23.00	14.54	5.38	4.31	0.61	3.77
67	I7_SR1	SilentIntronRegion	0	15.53	13.53	10.90	1.41	2.89	3.90	1.39
68	I7_AR2	ActiveIntronRegion	1	14.73	25.52	11.74	8.84	3.47	7.31	1.71
69	E8_Aa	NovelBoundary	1	20.35	24.06	22.78	8.83	3.94	4.23	3.77
70	ER8a	ExonRegion	0	95.63	220.89	119.78	182.04	227.98	132.16	136.13
71	E8_Da	KnownBoundary	1	50.00	195.54	73.98	82.79	247.40	65.36	45.66
72	E8a_E8b	KnownJunction	0	0.00	0.00	0.00	3.85	1.18	0.00	0.00
73	E8a_E9a	KnownJunction	1	32.40	90.61	59.69	100.37	32.39	107.60	92.85
74	ER8b	ExonRegion	1	53.61	172.64	50.17	88.58	230.54	56.24	39.72
75	E8_Db	KnownBoundary	1	58.83	162.52	57.06	96.09	469.38	53.97	52.84
76	ER8c	ExonRegion	1	70.07	219.71	75.93	110.82	275.03	69.24	57.28
77	E8_Ab	KnownBoundary	1	72.40	221.57	52.41	102.97	210.70	74.53	47.82
78	ER8d	ExonRegion	1	99.40	278.86	92.23	127.76	493.18	91.66	72.75
79	E8_Dc	KnownBoundary	1	95.18	217.76	96.83	110.83	715.72	67.59	67.70
80	ER8e	ExonRegion	0	78.66	142.71	65.45	79.72	243.46	71.11	45.08
81	ER8f	ExonRegion	0	0.51	3.64	2.26	0.00	4.32	0.00	0.00
82	I8	Intron	0	22.23	9.36	18.43	7.36	5.26	6.42	4.42
83	I8_AR3	ActiveIntronRegion	0	20.97	11.62	19.43	7.01	11.96	6.56	6.05
84	I8_SR3	SilentIntronRegion	0	15.96	10.33	18.75	4.48	9.50	4.35	4.26
85	I8_AR4	ActiveIntronRegion	0	21.03	15.49	20.73	7.29	12.80	11.32	4.36
86	I8_AR5	ActiveIntronRegion	0	25.66	10.00	19.54	7.22	12.25	7.44	5.56
87	I8_AR6	ActiveIntronRegion	1	59.49	5.28	31.14	6.41	4.52	6.21	5.91
88	I8_SR4	SilentIntronRegion	1	60.99	7.25	30.65	6.65	6.25	6.88	6.63
89	I8_AR7	ActiveIntronRegion	0	22.52	8.21	13.07	9.89	2.53	3.72	4.38
90	I8_SR5	SilentIntronRegion	0	21.19	8.66	18.25	7.63	2.32	5.86	3.98
91	I8_AR8	ActiveIntronRegion	0	18.77	13.06	20.30	3.85	2.28	6.81	3.80
92	ER9a	ExonRegion	0	48.99	88.71	59.07	82.40	48.08	89.55	81.75
93	E9a_E10a	KnownJunction	0	112.79	105.14	148.75	132.34	71.92	111.81	109.21
94	ER10a	ExonRegion	0	118.74	123.86	144.45	136.55	96.15	120.32	140.59
95	E10_Da	NovelBoundary	1	30.51	14.19	23.64	10.05	6.09	16.16	5.88
96	E10a_E11a	KnownJunction	0	84.25	110.37	90.69	109.66	95.90	91.36	133.77
97	I10	Intron	0	18.89	8.37	17.19	8.15	2.53	6.61	4.40
98	I10_AR1	ActiveIntronRegion	0	31.85	11.85	25.75	11.03	6.71	13.05	5.88
99	I10_SR1	SilentIntronRegion	0	14.36	7.17	14.21	7.15	1.07	4.35	3.89
100	E11_Aa	NovelBoundary	1	15.99	5.78	12.07	2.79	0.97	6.70	4.07
101	ER11a	ExonRegion	0	106.73	120.37	111.46	128.72	93.55	116.84	147.08
102	E11_Da	NovelBoundary	1	39.30	4.23	38.01	4.47	0.00	5.63	3.21
103	E11a_E12a	KnownJunction	0	88.09	121.35	87.07	121.86	103.44	116.55	146.12
104	ER12a	ExonRegion	0	78.42	109.90	79.40	111.70	72.69	109.94	128.87
105	E12a_E13a	KnownJunction	0	74.94	126.02	86.94	102.59	77.27	116.47	132.41
106	ER13a	ExonRegion	0	97.25	99.14	88.00	115.13	86.73	104.40	131.09
107	E13a_E14a	KnownJunction	0	94.11	105.19	103.47	133.10	112.13	116.47	129.04
108	ER14a	ExonRegion	0	97.98	104.77	91.37	123.74	72.39	130.76	138.81
109	E14a_E15a	KnownJunction	0	77.76	121.56	94.71	150.41	93.71	190.44	190.31
110	ER15a	ExonRegion	0	113.33	128.57	122.69	162.26	103.77	183.93	183.94
111	E15a_E16a	KnownJunction	0	77.76	114.67	105.38	150.87	93.69	176.29	147.34
112	ER16a	ExonRegion	0	91.11	118.26	119.71	164.81	99.84	183.19	161.36
113	E16a_E17a	KnownJunction	0	100.49	123.48	114.47	164.96	126.12	208.56	162.73
114	ER17a	ExonRegion	0	74.15	102.59	100.55	139.17	76.79	189.60	145.05
115	E17_Da	KnownBoundary	1	20.91	21.41	12.59	11.76	24.48	2.57	5.57
116	E17a_E18a	KnownJunction	0	49.47	72.40	68.40	112.24	30.84	139.28	120.91
117	E17_Db	KnownBoundary	1	24.12	7.57	16.25	17.04	19.18	8.74	4.40
118	ER17b	ExonRegion	1	26.26	19.48	17.59	20.25	25.33	6.55	6.44
119	ER17c	ExonRegion	1	33.65	20.41	23.43	26.79	33.47	12.71	8.28
120	ER18a	ExonRegion	1	52.91	54.09	53.15	70.20	28.52	113.96	68.90
121	ER18b	ExonRegion	0	0.00	0.73	1.22	0.00	0.00	1.23	1.35