Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C20orf175	Gene	0	4.94	5.53	3.55	6.22	10.92	29.75	11.61
2	327979	Transcript	0	0.00	0.00	0.58	1.48	2.81	6.81	0.67
3	371611	Transcript	0	19.57	11.75	13.12	9.06	23.78	15.78	14.34
4	45083	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.00	0.00	0.18	2.08	3.62	10.84	0.00
6	E1a_E3a	KnownJunction	0	0.00	0.00	0.89	1.11	3.99	9.27	0.00
7	ER2a	ExonRegion	0	0.37	0.30	0.33	2.44	0.13	1.80	0.33
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	0.00	0.00	1.15	2.29	4.16	22.82	0.00
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.63	4.12	10.17	15.17	0.00
11	E4_Aa	NovelBoundary	0	1.95	1.05	0.66	2.87	0.95	14.53	2.24
12	ER4a	ExonRegion	0	1.59	1.25	2.30	4.13	7.27	33.69	2.09
13	E4_Da	NovelBoundary	0	3.72	1.05	0.82	3.82	0.00	19.40	4.99
14	E4a_E5a	KnownJunction	0	0.00	0.00	1.77	1.22	7.47	31.57	0.00
15	E5_Aa	NovelBoundary	0	0.00	7.09	0.65	8.61	0.00	19.70	4.99
16	ER5a	ExonRegion	0	0.00	0.00	1.17	2.10	8.64	39.09	1.89
17	E5_Da	NovelBoundary	0	0.82	5.96	1.54	5.12	1.18	18.41	7.55
18	E5a_E6a	KnownJunction	0	0.00	0.00	1.64	0.00	8.28	36.98	0.00
19	I5	Intron	0	1.94	4.03	2.04	8.43	0.43	15.47	6.35
20	I5_SR1	SilentIntronRegion	0	1.95	4.03	2.05	8.45	0.43	15.50	6.36
21	I5	Intron	0	2.15	2.48	1.71	4.46	0.55	8.13	4.27
22	I5_SR1	SilentIntronRegion	0	2.17	2.50	1.72	4.48	0.55	8.18	4.30
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	4.82	6.57	15.09	0.00
24	ER6a	ExonRegion	0	0.00	0.00	0.68	3.74	7.69	34.28	0.00
25	E7_Aa	NovelBoundary	0	3.35	4.89	1.55	2.44	0.00	7.88	7.80
26	ER7a	ExonRegion	0	0.01	0.04	1.05	2.72	10.02	23.11	0.00
27	E7_Da	NovelBoundary	0	0.87	2.76	3.06	1.49	0.00	12.86	6.05
28	E7a_E8a	KnownJunction	0	0.00	0.00	1.61	1.68	6.64	21.41	0.00
29	I7	Intron	0	1.96	6.27	1.00	3.83	0.22	14.65	6.21
30	I7_SR1	SilentIntronRegion	0	1.97	6.30	1.01	3.85	0.22	14.71	6.24
31	E8_Aa	NovelBoundary	0	0.00	8.20	1.29	5.82	0.00	8.04	11.91
32	ER8a	ExonRegion	0	1.02	4.24	1.02	4.15	6.59	27.21	2.69
33	E8_Da	NovelBoundary	0	3.69	7.41	0.53	4.63	0.92	12.97	11.36
34	E8a_E9a	KnownJunction	0	0.00	0.00	0.86	1.52	8.67	9.92	0.00
35	I8	Intron	0	1.13	4.26	0.34	3.12	0.27	11.08	3.04
36	I8_SR1	SilentIntronRegion	0	1.15	4.32	0.35	3.16	0.28	11.23	3.08
37	E9_Aa	NovelBoundary	0	2.79	9.59	2.20	4.66	0.00	17.82	5.16
38	ER9a	ExonRegion	0	0.00	0.00	1.15	1.60	8.31	12.78	0.00
39	E9_Da	NovelBoundary	0	5.17	5.99	5.32	7.07	0.00	20.69	10.43
40	E9a_E10a	KnownJunction	0	0.00	0.00	2.23	2.82	6.34	9.46	0.00
41	E9a_E11a	NovelJunction	0	0.00	0.00	0.00	0.00	2.14	10.08	0.00
42	E10_Aa	NovelBoundary	0	0.97	5.39	0.00	2.76	0.00	13.64	12.34
43	ER10a	ExonRegion	0	0.00	0.00	2.03	1.76	5.93	14.74	0.02
44	E10_Da	NovelBoundary	0	0.00	0.00	0.89	4.01	0.00	13.02	3.01
45	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	5.09	12.68	0.00
46	E11_Aa	NovelBoundary	0	0.70	6.25	0.00	6.07	0.00	15.38	5.37
47	ER11a	ExonRegion	0	0.93	3.56	1.50	6.78	7.24	28.61	3.61
48	E11_Da	NovelBoundary	0	1.03	1.00	1.31	8.64	0.00	9.22	3.94
49	E11a_E12a	KnownJunction	0	0.00	0.00	1.24	1.54	7.33	24.90	0.00
50	E12_Aa	NovelBoundary	0	0.00	5.52	0.83	7.45	0.00	13.51	6.52
51	ER12a	ExonRegion	0	0.40	1.31	1.32	7.58	7.85	35.73	3.51
52	E12_Da	NovelBoundary	0	0.87	4.31	2.79	3.66	0.00	9.30	10.48
53	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	4.98	10.77	21.49	0.00
54	I12	Intron	0	2.42	5.78	1.78	4.73	0.26	9.12	6.11
55	I12_SR1	SilentIntronRegion	0	2.42	5.78	1.79	4.74	0.26	9.13	6.12
56	E13_Aa	NovelBoundary	0	0.90	10.32	2.72	3.87	0.00	14.04	9.66
57	ER13a	ExonRegion	0	1.77	2.10	0.40	6.24	10.43	32.44	3.13
58	E13_Da	NovelBoundary	0	1.79	5.15	2.31	3.82	1.08	15.92	5.80
59	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	1.33	12.73	15.12	0.00
60	I13	Intron	0	3.30	3.04	1.93	5.20	0.56	11.57	8.74
61	I13_SR1	SilentIntronRegion	0	3.31	3.05	1.94	5.21	0.56	11.59	8.76
62	E14_Aa	NovelBoundary	0	5.36	7.46	6.22	13.49	0.00	17.77	12.87
63	ER14a	ExonRegion	0	2.09	3.70	1.52	5.42	3.55	30.02	4.71
64	E14a_E15a	KnownJunction	0	0.00	0.00	0.56	0.00	1.98	19.32	0.00
65	I14	Intron	0	5.07	4.57	3.15	4.78	3.48	11.79	12.04
66	I14_SR1	SilentIntronRegion	0	5.95	4.09	3.70	4.48	4.14	9.95	10.09
67	I14_AR1	ActiveIntronRegion	0	3.92	3.90	2.56	3.31	2.88	13.44	17.61
68	I14_SR2	SilentIntronRegion	0	3.34	7.62	1.88	8.36	1.79	16.74	11.26
69	E15_Aa	NovelBoundary	0	1.89	11.22	1.54	6.61	0.97	15.01	23.59
70	ER15a	ExonRegion	0	2.11	4.38	0.53	7.71	4.62	36.48	8.88
71	E15_Da	KnownBoundary	0	1.89	2.97	0.72	4.14	1.91	19.38	13.80
72	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	6.69	10.67	0.00
73	ER15b	ExonRegion	0	19.57	11.75	13.12	9.06	23.78	15.78	14.34
74	E15_Db	NovelBoundary	0	0.68	4.05	0.70	3.41	0.85	12.49	4.14
75	I15	Intron	0	2.72	1.76	1.04	3.78	1.72	11.50	11.66
76	I15_AR2	ActiveIntronRegion	0	1.97	1.30	0.81	3.33	1.95	10.56	10.80
77	I15_SR1	SilentIntronRegion	0	4.27	2.70	1.52	4.72	1.25	13.45	13.46
78	E16_Aa	NovelBoundary	0	4.34	3.18	0.88	8.15	3.16	23.02	10.07
79	ER16a	ExonRegion	0	2.35	2.78	1.91	4.29	10.98	25.93	6.64
80	E16_Da	NovelBoundary	0	4.46	0.00	2.44	10.46	0.90	8.15	19.16
81	E16a_E17a	KnownJunction	0	0.00	2.15	0.00	1.57	7.84	16.16	0.00
82	I16	Intron	0	2.75	4.56	2.45	5.76	2.39	9.27	14.24
83	I16_SR1	SilentIntronRegion	0	1.16	2.37	2.11	2.42	0.65	6.30	12.87
84	I16_AR1	ActiveIntronRegion	0	3.11	5.04	2.54	6.52	2.78	9.98	14.61
85	E17_Aa	NovelBoundary	0	7.09	16.45	7.42	19.40	2.26	22.62	33.65
86	ER17a	ExonRegion	0	3.66	13.02	2.62	5.11	8.27	44.77	19.51
87	E17_Da	NovelBoundary	0	8.08	11.30	5.25	17.39	1.18	19.14	25.61
88	E17a_E18a	KnownJunction	0	0.60	0.00	0.82	0.00	4.40	24.15	0.00
89	I17	Intron	0	2.60	8.32	1.11	4.30	3.53	16.86	14.64
90	I17_SR1	SilentIntronRegion	0	3.97	5.82	0.68	1.49	1.30	10.81	14.33
91	I17_AR1	ActiveIntronRegion	0	1.97	9.57	1.33	5.67	4.62	19.85	14.88
92	E18_Aa	NovelBoundary	0	4.74	6.04	3.28	6.37	4.36	34.22	19.68
93	ER18a	ExonRegion	0	0.42	6.23	2.87	5.77	6.13	33.57	10.34
94	E18_Da	NovelBoundary	0	2.97	11.74	1.44	10.92	1.13	22.43	26.43
95	E18a_E19a	KnownJunction	0	1.67	0.00	1.62	1.06	5.35	28.25	0.00
96	I18	Intron	0	3.96	4.48	2.65	5.03	1.03	9.35	15.80
97	I18_SR1	SilentIntronRegion	0	4.03	4.70	3.62	5.18	0.48	12.42	16.64
98	I18_AR1	ActiveIntronRegion	0	3.93	4.36	2.08	4.96	1.38	7.52	15.35
99	E19_Aa	NovelBoundary	0	4.39	3.23	4.74	3.03	1.04	9.78	21.10
100	ER19a	ExonRegion	0	1.55	3.39	3.76	4.76	10.33	26.17	11.68
101	E19_Da	NovelBoundary	0	4.56	6.09	4.18	8.40	1.15	14.20	20.42
102	E19a_E20a	KnownJunction	0	0.88	0.00	0.75	0.00	10.49	19.72	0.00
103	I19	Intron	0	6.57	10.95	3.72	6.77	1.26	12.39	23.78
104	I19_AR1	ActiveIntronRegion	0	6.09	10.23	4.06	7.37	1.44	8.47	16.57
105	I19_SR1	SilentIntronRegion	0	6.78	11.26	3.62	6.60	1.21	13.82	26.42
106	E20_Aa	NovelBoundary	0	5.79	9.83	4.25	11.49	1.01	16.37	24.45
107	ER20a	ExonRegion	0	2.71	4.99	2.09	6.08	7.21	31.90	13.76
108	E20_Da	NovelBoundary	0	6.41	14.34	3.75	11.89	0.00	14.36	22.00
109	E20a_E21a	KnownJunction	0	1.03	0.00	1.47	0.00	19.57	41.86	0.00
110	I20	Intron	0	6.67	8.53	4.77	5.91	1.26	12.19	28.19
111	I20_SR1	SilentIntronRegion	0	6.68	8.54	4.77	5.92	1.26	12.21	28.22
112	E21_Aa	NovelBoundary	0	7.86	8.28	1.78	6.10	2.35	19.64	35.46
113	ER21a	ExonRegion	0	0.82	0.03	0.90	4.62	17.01	35.42	2.50
114	E21_Da	NovelBoundary	0	5.32	12.16	2.60	10.02	0.00	13.29	21.28
115	E21a_E22a	KnownJunction	0	0.98	0.00	0.79	1.41	13.58	21.23	0.00
116	E21a_E23a	NovelJunction	0	1.02	0.00	0.00	0.00	0.00	15.60	0.00
117	I21	Intron	0	6.81	7.83	4.21	8.80	1.37	13.56	21.95
118	I21_SR1	SilentIntronRegion	0	1.92	2.72	2.31	3.44	0.27	4.90	9.07
119	I21_AR1	ActiveIntronRegion	0	8.21	9.50	4.57	8.39	1.69	15.45	22.36
120	I21_SR2	SilentIntronRegion	0	9.90	10.78	5.69	14.97	2.05	19.89	34.72
121	E22_Aa	NovelBoundary	0	10.83	8.56	9.14	13.33	2.17	13.00	32.30
122	ER22a	ExonRegion	0	4.66	2.98	2.71	7.51	10.55	32.99	7.12
123	E22_Da	NovelBoundary	0	13.82	12.24	7.65	8.02	0.00	12.46	20.31
124	E22a_E23a	KnownJunction	0	1.03	0.00	3.03	1.68	16.99	34.87	0.00
125	I22	Intron	0	4.55	9.82	3.10	9.27	0.88	12.69	20.07
126	I22_SR1	SilentIntronRegion	0	4.57	9.85	3.11	9.31	0.88	12.74	20.15
127	E23_Aa	NovelBoundary	0	6.91	8.22	9.17	7.23	1.01	8.95	21.96
128	ER23a	ExonRegion	0	8.13	10.41	4.96	9.56	18.19	47.48	29.41
129	ER23b	ExonRegion	0	0.00	0.00	0.68	1.25	0.81	0.31	2.02
130	IG33	Intergenic	0	5.53	8.89	4.27	6.20	1.27	6.45	19.88
131	IG33_SR1	SilentIntergenicRegion	0	5.58	8.97	4.30	6.25	1.28	6.49	20.03