Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RALY	Gene	0	177.48	463.89	145.59	306.70	358.63	254.31	297.25
2	246194	Transcript	0	288.80	503.96	237.02	361.91	782.81	232.81	483.79
3	375114	Transcript	0	33.26	84.73	32.61	56.13	90.64	55.58	83.05
4	375054	Transcript	0	0.00	0.00	0.00	2.98	1.18	0.00	0.00
5	IG49_AR2	ActiveIntergenicRegion	0	7.08	4.93	4.95	2.56	9.25	4.08	9.25
6	ER1a	ExonRegion	0	35.93	136.20	28.10	109.39	66.48	103.48	43.40
7	E1_Da	NovelBoundary	1	60.05	1.23	35.58	3.36	0.00	2.89	0.69
8	E1a_E2a	KnownJunction	0	215.48	552.44	155.85	373.50	222.85	371.20	303.55
9	E1a_E3a	NovelJunction	0	19.19	58.53	17.49	65.64	14.94	65.07	20.84
10	ER2a	ExonRegion	0	226.62	632.90	205.08	436.51	459.28	363.93	384.58
11	E2a_E3a	KnownJunction	0	281.46	775.30	269.69	570.97	558.92	475.27	489.42
12	E3_Ab	NovelBoundary	0	179.57	493.40	164.86	342.32	216.40	313.56	274.25
13	ER3a	ExonRegion	0	284.71	818.21	268.45	563.25	653.47	475.81	482.13
14	ER3b	ExonRegion	0	342.83	870.08	326.70	598.23	695.22	552.00	600.43
15	E3_Da	KnownBoundary	0	415.98	759.09	383.72	570.13	685.18	514.02	656.64
16	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	2.98	1.18	0.00	0.00
17	ER3c	ExonRegion	0	301.55	682.15	288.10	463.80	623.94	398.02	533.91
18	E3b_E4a	KnownJunction	0	262.58	612.26	256.78	300.22	629.71	290.83	486.87
19	E3b_E5a	NovelJunction	0	3.97	11.27	1.55	19.18	0.00	21.63	0.00
20	E3b_E7a	NovelJunction	1	0.00	3.84	2.63	19.07	0.00	5.41	0.00
21	E3b_E10a	NovelJunction	1	0.73	18.55	0.72	7.04	0.00	21.23	0.00
22	ER4a	ExonRegion	0	298.02	629.55	269.53	368.01	708.72	306.31	559.67
23	E4a_E5a	KnownJunction	0	288.80	503.96	237.02	361.91	782.81	232.81	483.79
24	E4a_E6a	KnownJunction	0	33.26	84.73	32.61	56.13	90.64	55.58	83.05
25	ER5a	ExonRegion	0	228.61	448.51	193.70	334.73	602.41	209.47	404.78
26	E5a_E6a	KnownJunction	0	168.47	312.13	122.03	232.12	428.85	148.20	246.59
27	I5	Intron	1	35.67	38.57	14.97	15.14	8.41	8.17	5.36
28	I5_AR2	ActiveIntronRegion	1	44.20	39.44	15.90	17.00	10.09	10.00	5.91
29	E6_Aa	NovelBoundary	1	89.37	33.15	67.67	12.79	6.29	8.20	4.18
30	ER6a	ExonRegion	0	325.69	582.72	231.87	364.06	546.27	267.64	438.74
31	E6a_E7a	KnownJunction	0	240.40	617.88	173.52	386.43	507.60	277.16	380.11
32	ER7a	ExonRegion	0	273.67	647.44	191.16	394.40	519.55	294.21	410.48
33	E7a_E8a	KnownJunction	0	340.44	627.83	196.70	379.19	494.78	303.91	367.83
34	ER8a	ExonRegion	0	159.95	419.21	106.22	279.13	319.15	215.87	251.45
35	E8a_E9a	KnownJunction	0	202.83	694.51	154.74	455.54	490.31	370.75	394.10
36	E8a_E10a	NovelJunction	0	0.92	3.89	0.70	13.09	0.00	4.42	0.76
37	ER9a	ExonRegion	0	172.93	679.85	126.66	410.56	402.45	323.06	370.26
38	E9a_E10a	KnownJunction	0	129.86	558.58	90.00	327.75	371.43	246.02	312.65
39	ER10a	ExonRegion	0	112.16	457.12	96.51	288.10	245.38	244.81	242.61
40	IG50	Intergenic	0	31.88	33.94	19.22	16.80	5.37	9.39	11.88
41	IG50_AR1	ActiveIntergenicRegion	0	25.01	24.34	14.17	13.85	5.63	4.47	8.79
42	IG50_SR1	SilentIntergenicRegion	0	38.86	30.72	22.16	11.40	6.36	3.68	18.98
43	IG50_AR2	ActiveIntergenicRegion	0	42.86	47.75	25.98	16.98	6.85	4.67	24.39
44	IG50_SR2	SilentIntergenicRegion	0	40.03	54.88	27.34	19.79	7.20	8.03	20.63
45	IG50_AR3	ActiveIntergenicRegion	0	30.28	42.58	22.08	14.71	5.43	15.39	12.08
46	IG50_SR3	SilentIntergenicRegion	0	34.48	43.56	23.61	17.10	6.53	9.23	16.34
47	IG50_AR4	ActiveIntergenicRegion	0	44.38	57.55	26.12	24.20	7.48	13.83	18.10
48	IG50_SR4	SilentIntergenicRegion	0	38.09	68.20	22.76	29.69	11.12	18.33	22.18
49	IG50_AR5	ActiveIntergenicRegion	0	34.40	49.12	22.41	28.10	8.44	18.80	20.02
50	IG50_SR5	SilentIntergenicRegion	0	21.12	19.14	14.16	11.92	6.63	6.37	8.11
51	IG50_SR6	SilentIntergenicRegion	0	26.52	16.42	15.34	9.79	2.23	5.12	5.65