Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DARS2	Gene	0	57.92	21.16	56.10	33.23	196.25	26.81	124.50
2	239457	Transcript	0	2.54	0.00	3.87	6.04	0.97	0.00	3.51
3	361951	Transcript	0	37.08	8.92	35.27	18.41	194.02	11.00	123.48
4	IG43	Intergenic	0	9.77	10.03	14.17	19.21	29.99	29.93	16.55
5	IG43_AR1	ActiveIntergenicRegion	0	9.80	10.07	14.23	19.27	30.08	30.05	16.61
6	ER1a	ExonRegion	0	57.70	24.16	50.20	36.08	145.84	36.08	87.95
7	E1_Da	NovelBoundary	0	3.61	4.54	2.85	4.98	0.00	11.20	0.53
8	E1a_E2a	KnownJunction	0	34.03	12.87	41.70	18.31	156.62	18.95	99.55
9	ER2a	ExonRegion	0	40.52	20.96	41.68	23.80	144.44	18.55	105.52
10	E2_Da	NovelBoundary	0	9.05	10.59	5.91	9.75	1.18	9.84	3.43
11	E2a_E3a	KnownJunction	0	46.80	16.97	48.17	20.45	177.32	14.47	94.89
12	I2	Intron	0	4.52	6.29	5.85	10.56	1.09	10.63	2.77
13	I2_SR1	SilentIntronRegion	0	4.53	6.31	5.86	10.58	1.09	10.64	2.78
14	E3_Aa	NovelBoundary	0	1.03	5.23	2.18	6.23	0.00	9.67	1.38
15	ER3a	ExonRegion	0	56.06	18.64	46.79	16.01	167.55	10.38	111.46
16	E3_Da	NovelBoundary	0	3.72	10.14	2.30	23.73	1.08	23.74	2.04
17	E3a_E4a	KnownJunction	1	49.69	13.35	34.91	11.54	133.96	1.39	99.17
18	I3	Intron	0	6.25	8.33	9.14	14.52	0.47	13.47	5.44
19	I3_SR1	SilentIntronRegion	0	6.26	8.35	9.15	14.54	0.47	13.50	5.45
20	E4_Aa	NovelBoundary	0	15.45	14.21	13.02	19.67	0.00	21.01	9.04
21	ER4a	ExonRegion	0	60.19	21.15	56.73	25.37	187.49	17.31	109.83
22	E4_Da	NovelBoundary	0	8.63	13.95	12.99	20.78	0.00	32.32	5.36
23	E4a_E5a	KnownJunction	1	75.61	14.06	65.66	14.09	219.69	1.23	117.32
24	I4	Intron	0	6.85	8.86	4.73	11.32	0.97	16.22	6.40
25	I4_SR1	SilentIntronRegion	0	6.88	8.90	4.76	11.37	0.97	16.30	6.43
26	ER5a	ExonRegion	0	90.54	9.43	62.62	10.51	205.26	4.14	114.54
27	E5a_E6a	KnownJunction	0	61.35	10.67	64.59	14.14	171.88	4.40	97.12
28	I5	Intron	0	5.86	4.72	7.44	10.15	0.54	8.83	3.08
29	I5_SR1	SilentIntronRegion	0	5.87	4.73	7.46	10.18	0.54	8.85	3.08
30	E6_Aa	NovelBoundary	1	4.09	1.08	14.41	6.96	0.00	13.43	2.02
31	ER6a	ExonRegion	0	76.08	19.41	65.50	27.00	200.91	13.14	108.90
32	E6_Da	NovelBoundary	1	10.43	13.50	13.28	40.12	2.21	35.67	4.56
33	E6a_E7a	KnownJunction	0	81.08	15.58	64.62	12.65	256.07	5.92	118.68
34	I6	Intron	0	6.41	7.29	8.09	13.56	0.50	18.41	4.20
35	I6_SR1	SilentIntronRegion	0	6.42	7.31	8.11	13.59	0.51	18.47	4.22
36	E7_Aa	NovelBoundary	0	7.64	7.75	11.22	20.16	0.00	20.21	3.60
37	ER7a	ExonRegion	1	58.38	16.47	50.44	15.10	178.56	4.49	102.95
38	E7_Da	NovelBoundary	1	4.71	5.39	7.77	12.16	0.00	21.41	0.86
39	E7a_E8a	KnownJunction	1	29.11	12.06	30.05	14.52	130.85	1.15	68.19
40	I7	Intron	0	3.09	4.41	5.15	9.99	0.23	9.82	1.66
41	I7_SR1	SilentIntronRegion	0	3.10	4.42	5.16	10.01	0.23	9.84	1.66
42	E8_Aa	NovelBoundary	0	3.49	9.67	8.28	7.67	0.00	12.09	4.89
43	ER8a	ExonRegion	0	41.35	12.59	53.75	21.69	163.97	12.92	101.62
44	E8_Da	NovelBoundary	1	7.58	6.54	1.39	19.53	0.00	19.19	3.21
45	E8a_E9a	KnownJunction	0	32.78	9.27	49.05	14.79	133.13	3.99	110.68
46	I8	Intron	0	6.11	9.79	4.64	14.94	0.59	18.28	4.63
47	I8_AR1	ActiveIntronRegion	0	7.42	11.17	5.83	15.08	0.46	21.20	5.03
48	I8_SR2	SilentIntronRegion	0	5.31	9.05	3.90	15.32	0.70	16.67	4.48
49	E9_Aa	NovelBoundary	0	5.39	11.30	11.51	20.40	0.85	20.69	5.55
50	ER9a	ExonRegion	0	34.81	15.24	49.30	19.54	190.91	8.84	138.90
51	E9_Da	NovelBoundary	0	7.19	15.11	8.26	23.05	0.00	23.02	3.94
52	E9a_E10a	KnownJunction	1	26.95	19.94	46.62	18.96	247.63	11.15	142.23
53	I9	Intron	0	2.56	2.27	4.19	5.65	0.42	9.94	2.20
54	I9_SR1	SilentIntronRegion	0	2.57	2.28	4.20	5.67	0.43	9.97	2.21
55	E10_Aa	NovelBoundary	1	22.25	18.55	28.01	26.52	0.00	24.58	9.47
56	ER10a	ExonRegion	0	45.24	28.92	61.25	35.09	209.32	26.59	168.67
57	E10_Da	NovelBoundary	1	11.45	11.38	4.57	42.32	0.00	34.33	2.87
58	E10a_E11a	KnownJunction	0	49.02	10.40	48.80	18.80	197.42	13.29	147.44
59	I10	Intron	0	4.67	9.41	8.77	16.08	0.20	19.23	4.60
60	I10_SR1	SilentIntronRegion	0	4.69	9.45	8.80	16.14	0.20	19.30	4.61
61	E11_Aa	NovelBoundary	0	2.74	4.05	3.26	8.37	0.00	13.43	5.75
62	ER11a	ExonRegion	0	44.26	22.71	55.83	24.17	251.17	21.26	160.67
63	E11_Da	NovelBoundary	1	7.94	7.07	10.43	13.09	1.18	20.82	2.45
64	E11a_E12a	KnownJunction	0	50.15	8.96	52.97	9.62	245.10	12.68	139.77
65	I11	Intron	0	5.73	12.40	8.25	28.36	0.39	27.78	7.97
66	I11_SR1	SilentIntronRegion	0	5.74	12.41	8.26	28.39	0.39	27.80	7.98
67	E12_Aa	NovelBoundary	0	7.53	4.83	6.71	8.70	0.00	11.98	5.75
68	ER12a	ExonRegion	0	72.46	9.20	58.93	16.43	272.70	16.68	159.46
69	E12_Da	NovelBoundary	0	4.22	3.86	5.63	4.17	0.00	9.00	3.51
70	E12a_E13a	KnownJunction	0	75.66	10.48	60.37	15.58	283.09	13.59	148.17
71	E12a_E14a	NovelJunction	0	5.67	2.97	5.75	1.25	12.26	1.34	7.18
72	I12	Intron	0	8.94	10.77	12.99	21.12	1.17	27.79	6.83
73	I12_SR1	SilentIntronRegion	1	8.96	10.80	13.02	21.18	1.18	27.87	6.85
74	E13_Aa	NovelBoundary	0	14.04	9.12	9.43	25.14	2.17	20.10	10.59
75	ER13a	ExonRegion	0	97.06	15.64	76.11	35.33	364.03	25.23	187.84
76	E13_Da	NovelBoundary	1	15.12	11.61	15.07	33.54	3.23	33.61	17.74
77	E13a_E14a	KnownJunction	0	124.76	20.31	85.42	29.15	257.66	15.57	232.71
78	I13	Intron	0	8.62	11.05	12.90	18.78	2.71	17.58	9.29
79	I13_SR1	SilentIntronRegion	0	8.41	10.94	11.65	14.88	2.08	15.34	8.35
80	I13_AR2	ActiveIntronRegion	0	11.13	10.97	20.54	26.67	3.48	25.23	13.70
81	E14_Aa	NovelBoundary	0	11.15	19.94	11.11	46.46	5.09	31.81	9.14
82	ER14a	ExonRegion	0	76.43	25.24	60.57	41.48	293.14	29.56	189.39
83	E14_Da	NovelBoundary	0	15.49	19.49	20.38	27.20	4.22	23.85	16.29
84	E14a_E15a	KnownJunction	0	29.74	8.43	23.81	12.27	161.25	6.00	94.04
85	E14a_E16a	KnownJunction	0	2.54	0.00	3.87	6.04	0.97	0.00	3.51
86	I14	Intron	0	11.82	7.29	14.65	20.40	3.62	17.18	10.77
87	I14_SR1	SilentIntronRegion	0	12.34	7.57	15.28	21.21	3.75	17.76	11.20
88	E15_Aa	NovelBoundary	1	10.92	10.40	19.40	23.60	5.42	29.91	16.75
89	ER15a	ExonRegion	0	39.27	10.13	41.65	28.06	215.54	18.42	136.19
90	E15_Da	NovelBoundary	1	15.40	11.85	23.37	42.72	9.71	36.21	21.81
91	E15a_E16a	KnownJunction	0	42.23	8.20	40.35	14.90	205.26	8.58	140.19
92	I15	Intron	0	9.94	8.02	13.51	19.64	3.18	19.55	9.32
93	I15_SR1	SilentIntronRegion	0	9.96	8.03	13.54	19.67	3.18	19.59	9.33
94	E16_Aa	NovelBoundary	1	8.40	5.60	26.05	30.75	3.48	21.57	19.62
95	ER16a	ExonRegion	0	32.64	14.93	45.01	16.77	156.37	11.10	124.39
96	E16_Da	NovelBoundary	1	14.12	2.44	10.63	27.74	13.90	13.02	9.89
97	E16a_E17a	KnownJunction	0	23.33	10.46	31.47	12.49	151.55	7.69	95.92
98	I16	Intron	0	19.01	11.99	26.62	24.87	10.85	22.65	18.94
99	I16_SR1	SilentIntronRegion	0	19.08	12.04	26.72	24.96	10.89	22.73	19.00
100	E17_Aa	NovelBoundary	0	14.69	11.27	26.99	27.42	14.04	27.42	17.77
101	ER17a	ExonRegion	0	54.55	23.40	57.76	41.76	175.97	35.21	114.75
102	IG44	Intergenic	0	18.99	16.77	35.19	31.52	12.94	22.51	22.88
103	IG44_SR2	SilentIntergenicRegion	0	11.31	3.76	13.66	8.27	10.16	8.76	14.08
104	IG44_SR3	SilentIntergenicRegion	0	12.68	10.13	19.42	20.82	6.44	10.58	11.83
105	IG44_AR3	ActiveIntergenicRegion	0	27.61	26.82	56.82	48.38	20.43	38.18	36.58