Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PBXIP1	Gene	0	55.14	21.58	19.20	11.36	51.42	41.30	44.61
2	368465	Transcript	0	3.13	0.25	1.95	0.76	14.35	2.50	2.78
3	368460	Transcript	0	0.85	1.14	0.98	0.74	1.49	2.04	2.70
4	351146	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	309136	Transcript	0	0	0	0	0	0	0	0
6	368458	Transcript	0	0.53	0.00	0.00	0.00	0.91	0.00	0.00
7	368463	Transcript	0	0	0	0	0	0	0	0
8	IG31_SR3	SilentIntergenicRegion	0	2.49	0.93	1.44	1.66	0.00	4.07	7.96
9	IG31_SR2	SilentIntergenicRegion	0	5.46	1.21	0.00	1.25	0.00	5.52	11.73
10	IG31_SR1	SilentIntergenicRegion	0	4.18	0.43	0.50	1.83	0.00	4.57	7.53
11	ER1a	ExonRegion	0	3.63	0.44	3.14	0.00	38.65	0.56	2.15
12	ER1b	ExonRegion	0	11.78	5.26	9.93	0.00	60.74	6.95	14.39
13	ER1c	ExonRegion	1	19.21	7.29	13.04	0.00	69.24	9.81	22.77
14	ER1d	ExonRegion	0	35.72	14.54	20.09	3.06	98.22	15.76	40.03
15	E1a_E2a	KnownJunction	0	81.36	24.80	31.23	7.80	103.02	45.67	83.17
16	E1a_E3a	NovelJunction	0	4.27	1.37	3.13	1.30	8.60	1.66	3.05
17	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I1	Intron	1	4.92	2.07	3.80	3.22	1.46	2.47	10.09
19	I1_AR2	ActiveIntronRegion	1	5.30	3.33	3.62	4.11	2.15	2.34	13.53
20	I1_SR3	SilentIntronRegion	1	7.75	2.67	5.56	4.13	2.30	2.48	12.44
21	ER2a	ExonRegion	0	42.01	21.05	20.18	5.97	56.16	21.21	54.70
22	E2_Ab	KnownBoundary	0	32.51	18.68	12.92	7.42	10.47	18.22	47.32
23	ER2b	ExonRegion	0	12.48	13.05	5.92	3.89	3.85	15.30	19.95
24	E2a_E3a	KnownJunction	0	4.09	10.69	1.45	2.38	1.18	20.15	8.97
25	ER3a	ExonRegion	0	8.20	12.15	2.26	2.91	4.59	22.48	7.87
26	ER3b	ExonRegion	0	67.31	18.74	26.54	8.97	47.91	42.48	65.44
27	E3a_E4a	KnownJunction	0	73.35	12.24	34.23	9.78	140.97	38.03	91.00
28	ER4a	ExonRegion	0	66.79	17.29	24.28	8.75	93.00	38.67	69.42
29	E4a_E5a	KnownJunction	1	66.31	14.40	12.39	4.82	44.31	45.02	43.19
30	ER5a	ExonRegion	0	62.31	17.40	21.88	15.68	50.45	44.74	61.62
31	E5a_E6a	KnownJunction	0	0.75	0.00	0.00	0.00	1.08	0.00	0.00
32	E5a_E6b	KnownJunction	0	59.50	15.55	20.61	7.21	55.83	24.66	48.77
33	ER6a	ExonRegion	0	0.31	0.00	0.00	0.00	0.74	0.00	0.00
34	ER6b	ExonRegion	0	37.37	16.97	13.46	9.67	47.99	24.39	36.73
35	E6_Db	KnownBoundary	0	38.22	17.16	9.84	16.09	24.71	23.16	20.55
36	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER6c	ExonRegion	0	44.71	21.83	11.36	10.67	41.08	27.92	33.58
38	E6c_E7a	KnownJunction	0	36.92	22.86	12.11	7.50	39.49	30.77	41.25
39	ER7a	ExonRegion	0	35.64	21.16	12.11	7.53	40.36	22.02	37.07
40	ER8a	ExonRegion	0	32.53	20.79	13.31	5.53	33.66	30.82	30.48
41	E8a_E9a	KnownJunction	1	35.88	19.86	14.40	3.52	46.94	41.51	40.83
42	ER9a	ExonRegion	0	58.58	25.37	15.35	12.34	45.99	39.76	52.06
43	E9_Da	KnownBoundary	0	0.00	0.00	0.89	0.00	0.92	0.00	3.88
44	E9a_E10a	KnownJunction	0	54.94	22.65	21.66	6.99	41.63	48.21	47.85
45	ER9b	ExonRegion	0	1.71	2.29	1.96	1.49	2.97	4.07	5.39
46	ER10a	ExonRegion	0	60.99	27.35	20.83	14.15	50.57	46.28	46.91
47	E10_Da	KnownBoundary	0	54.81	36.81	19.08	11.95	88.75	52.80	52.81
48	E10a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER10b	ExonRegion	0	60.14	35.31	21.28	8.67	65.10	54.88	52.08
50	E10_Ab	KnownBoundary	0	57.13	31.87	25.90	15.25	126.26	65.74	57.20
51	ER10c	ExonRegion	0	76.01	33.19	31.84	19.35	89.16	62.02	71.81
52	E10b_E11a	KnownJunction	0	66.09	24.77	35.15	18.48	62.61	53.17	57.54
53	ER11a	ExonRegion	0	69.81	32.99	26.92	14.75	79.87	55.44	73.23
54	E11_Da	KnownBoundary	0	73.35	26.69	25.16	9.45	91.73	36.31	59.86
55	ER11b	ExonRegion	0	70.19	19.19	22.25	12.85	58.09	51.15	42.35
56	ER11c	ExonRegion	0	5.76	0.30	2.71	2.29	4.39	6.95	6.18