Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IGSF9	Gene	0	18.90	10.91	52.61	23.82	53.26	2.32	36.33
2	368094	Transcript	0	0	0	0	0	0	0	0
3	361509	Transcript	0	2.00	1.55	5.35	1.68	18.03	1.10	9.56
4	198587	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	4.58	3.04	17.75	1.14	32.12	0.00	7.00
6	ER2a	ExonRegion	0	12.10	10.39	27.36	6.38	26.56	0.81	23.87
7	E2a_E3a	KnownJunction	0	11.93	4.20	25.69	9.75	44.49	0.00	26.48
8	E2a_E4a	NovelJunction	0	1.18	0.00	1.24	0.00	7.65	0.00	3.17
9	ER3a	ExonRegion	0	18.11	4.81	34.32	9.19	38.08	1.46	28.75
10	E3a_E4a	KnownJunction	0	17.67	7.88	42.12	10.40	34.74	0.00	21.60
11	I3_AR9	ActiveIntronRegion	0	1.11	8.81	0.00	1.48	4.44	0.58	0.47
12	E4_Aa	NovelBoundary	0	1.87	8.91	0.76	6.88	0.97	7.48	2.11
13	ER4a	ExonRegion	0	25.87	15.52	69.63	11.04	64.04	1.20	36.74
14	E4_Da	NovelBoundary	0	5.72	11.03	0.00	3.36	0.00	2.89	1.52
15	E4a_E5a	KnownJunction	0	30.64	13.92	66.16	10.46	80.18	0.00	43.85
16	ER5a	ExonRegion	0	19.91	8.69	54.83	8.40	62.27	0.00	40.74
17	E5a_E6a	KnownJunction	0	18.99	7.78	34.76	12.38	70.13	0.00	39.76
18	ER6a	ExonRegion	0	16.01	6.01	31.76	11.16	63.88	0.00	44.40
19	E6a_E7a	KnownJunction	0	15.30	5.62	36.67	8.37	77.25	0.00	44.96
20	I6	Intron	0	5.21	6.76	4.99	1.62	11.68	0.91	5.72
21	I6_SR1	SilentIntronRegion	0	5.21	6.77	5.00	1.63	11.70	0.92	5.73
22	E7_Aa	NovelBoundary	1	8.81	17.13	3.58	0.00	19.02	0.00	5.47
23	ER7a	ExonRegion	0	22.94	8.10	43.41	9.82	88.13	1.93	53.48
24	E7a_E8a	KnownJunction	0	19.18	9.33	39.94	7.37	54.50	0.00	30.90
25	ER8a	ExonRegion	0	12.19	6.03	26.42	11.74	54.71	1.19	28.79
26	E8_Da	NovelBoundary	1	2.54	2.42	5.17	1.30	10.60	0.00	19.61
27	E8a_E9a	KnownJunction	0	9.61	13.35	51.36	12.95	65.35	0.00	24.39
28	E8a_E9b	KnownJunction	0	2.00	1.55	5.35	1.68	18.03	1.10	9.56
29	E9_Aa	NovelBoundary	1	5.12	1.55	3.84	0.00	11.78	1.07	11.74
30	ER9a	ExonRegion	0	14.18	10.04	49.78	12.37	57.73	1.80	31.17
31	E9_Ab	KnownBoundary	0	17.91	11.35	50.74	10.70	45.85	5.71	39.51
32	ER9b	ExonRegion	0	14.64	8.47	38.60	8.74	43.21	5.13	35.03
33	E9a_E10a	KnownJunction	0	12.57	11.11	31.07	8.24	35.20	0.00	22.69
34	I9	Intron	0	6.57	7.53	3.54	1.62	7.62	1.27	2.56
35	I9_AR1	ActiveIntronRegion	1	9.49	11.68	4.29	1.84	8.77	1.79	3.11
36	I9_SR2	SilentIntronRegion	0	7.92	7.63	4.81	1.91	10.73	1.28	3.40
37	ER10a	ExonRegion	0	14.24	11.37	42.07	10.02	53.13	0.97	32.62
38	E10a_E11a	KnownJunction	0	17.51	7.57	37.06	6.23	45.55	1.66	27.39
39	I10_AR1	ActiveIntronRegion	0	1.95	7.58	2.01	1.39	1.07	0.35	0.85
40	ER11a	ExonRegion	0	14.88	7.61	35.24	4.85	45.25	0.59	31.46
41	E11a_E12a	KnownJunction	0	7.88	7.62	27.19	6.77	30.08	1.29	30.81
42	ER12a	ExonRegion	0	18.00	14.43	44.38	7.50	67.96	1.07	35.38
43	E12_Da	NovelBoundary	0	0.72	8.83	4.94	2.95	1.13	1.13	1.38
44	E12a_E13a	KnownJunction	0	19.73	8.80	42.84	8.32	87.79	0.00	49.70
45	ER13a	ExonRegion	0	25.58	13.16	67.24	12.35	105.05	2.21	60.33
46	E13a_E14a	KnownJunction	0	23.25	5.41	83.45	11.87	117.64	0.00	60.32
47	E14_Aa	NovelBoundary	0	1.54	8.01	2.43	1.16	1.18	0.00	4.06
48	ER14a	ExonRegion	0	22.20	12.31	60.64	12.36	82.83	0.54	57.56
49	E14a_E15a	KnownJunction	0	19.76	5.94	58.86	9.51	77.96	0.00	50.27
50	ER15a	ExonRegion	0	15.42	13.25	45.68	9.82	52.24	0.57	35.79
51	E15a_E16a	KnownJunction	0	20.45	13.56	48.21	8.21	63.63	1.66	32.65
52	E16_Aa	NovelBoundary	0	4.16	9.54	2.99	1.49	0.00	1.55	0.89
53	ER16a	ExonRegion	0	22.26	14.92	39.04	10.90	50.71	0.53	44.24
54	E16_Da	NovelBoundary	0	1.90	7.57	3.89	4.20	0.85	0.00	6.98
55	E16a_E17a	KnownJunction	0	17.61	17.00	27.00	5.77	48.48	0.00	28.96
56	ER17a	ExonRegion	0	9.21	11.13	27.75	11.34	28.42	2.56	21.85
57	E17a_E18a	KnownJunction	0	16.37	6.41	24.99	4.98	27.29	4.23	26.54
58	I17	Intron	0	2.78	4.92	12.78	13.58	0.51	0.76	2.94
59	I17_AR1	ActiveIntronRegion	1	3.32	6.41	20.80	22.59	0.59	1.32	4.91
60	E18_Aa	NovelBoundary	0	0.00	9.88	7.86	16.17	1.18	6.00	0.00
61	ER18a	ExonRegion	0	9.69	10.99	28.59	25.58	24.95	4.05	25.76
62	E18_Da	NovelBoundary	0	0.82	20.75	8.25	7.37	4.03	1.37	0.72
63	E18a_E19a	KnownJunction	0	7.89	13.63	38.40	47.95	22.06	1.21	27.66
64	I18	Intron	0	2.51	8.88	5.59	3.42	2.36	0.56	2.01
65	I18_AR1	ActiveIntronRegion	0	2.52	8.93	5.62	3.43	2.37	0.56	2.02
66	ER19a	ExonRegion	0	17.29	13.29	66.80	43.90	38.96	4.61	32.93
67	E19a_E20a	KnownJunction	1	22.15	15.53	97.32	73.39	77.92	13.05	68.02
68	ER20a	ExonRegion	1	28.61	12.06	98.07	71.90	80.64	8.77	53.08
69	E20_Da	NovelBoundary	1	9.38	9.51	33.71	4.44	2.28	4.66	3.48
70	E20a_E21a	KnownJunction	1	24.23	11.66	80.50	63.37	75.57	2.68	41.83
71	ER21a	ExonRegion	1	29.00	9.23	69.12	49.02	59.10	2.20	36.64
72	IG27	Intergenic	0	7.59	18.36	10.93	4.02	0.20	2.95	0.21
73	IG27_SR3	SilentIntergenicRegion	0	7.88	19.22	11.53	4.02	0.20	3.14	0.06
74	IG27_SR2	SilentIntergenicRegion	0	7.96	19.32	11.27	4.57	0.14	2.96	0.62