Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHD1L	Gene	0	58.52	36.56	97.60	36.94	179.67	35.56	123.13
2	369258	Transcript	1	10.71	24.24	30.48	10.54	40.21	11.50	56.24
3	369259	Transcript	0	1.03	1.63	0.00	0.00	1.15	0.00	0.00
4	254086	Transcript	0	16.23	17.13	26.14	13.31	10.71	10.12	36.90
5	361293	Transcript	0	32.60	32.34	67.47	22.30	0.00	21.90	84.61
6	ER1a	ExonRegion	0	5.11	6.24	6.73	3.35	13.34	2.28	19.40
7	E1a_E3b	KnownJunction	1	0.68	9.46	6.04	1.44	12.01	4.26	19.65
8	E1a_E9a	KnownJunction	0	1.03	1.63	0.00	0.00	1.15	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	0.61	2.92	0.81	0.75	2.59	1.23	4.72
11	E3a_E3c	KnownJunction	0	2.67	10.77	4.11	3.17	0.00	3.03	7.62
12	ER3b	ExonRegion	1	2.97	16.52	6.86	4.28	11.20	5.07	24.65
13	E3_Ac	KnownBoundary	1	2.85	13.66	8.10	4.23	4.15	1.47	26.70
14	ER3c	ExonRegion	1	4.30	21.14	10.43	6.48	11.18	6.13	38.45
15	ER3d	ExonRegion	1	21.47	25.58	31.02	9.60	42.02	11.18	64.01
16	E3b_E4a	KnownJunction	1	31.48	26.77	39.81	10.02	97.63	18.09	90.12
17	ER4a	ExonRegion	0	30.50	33.45	58.04	18.70	106.61	16.65	102.94
18	E4_Da	KnownBoundary	0	12.23	12.16	26.15	8.13	56.57	4.13	33.05
19	E4a_E4b	KnownJunction	1	17.01	35.05	45.34	14.47	61.69	11.20	60.69
20	E4_Ab	KnownBoundary	1	8.03	13.92	27.58	7.86	25.45	12.86	42.78
21	ER4b	ExonRegion	0	27.15	42.12	74.96	23.69	97.45	24.11	110.63
22	ER4c	ExonRegion	0	28.98	47.29	78.00	24.05	94.93	26.97	109.38
23	E4b_E5a	KnownJunction	0	26.45	32.18	60.33	17.01	103.71	25.75	82.96
24	ER4d	ExonRegion	0	29.42	54.15	84.29	29.93	93.60	29.07	119.69
25	ER5a	ExonRegion	0	34.07	51.69	77.96	36.58	100.15	36.15	124.43
26	E5_Da	KnownBoundary	1	15.19	28.11	35.21	14.25	39.03	8.66	46.49
27	E5a_E5b	KnownJunction	0	15.59	32.45	31.89	27.28	0.00	18.36	65.97
28	E5_Ab	KnownBoundary	1	19.51	14.37	31.28	19.23	45.53	30.87	57.37
29	ER5b	ExonRegion	0	38.88	61.71	78.03	41.65	103.18	38.01	127.36
30	ER5c	ExonRegion	0	53.07	60.27	88.67	42.70	140.55	38.75	141.73
31	E5b_E6a	KnownJunction	0	52.64	37.96	71.43	41.99	139.24	39.80	109.41
32	ER6a	ExonRegion	0	63.40	52.35	95.11	40.18	145.44	37.66	135.07
33	E6a_E7a	KnownJunction	0	51.44	43.87	79.19	24.68	139.84	19.78	94.67
34	ER7a	ExonRegion	0	68.77	46.12	108.55	27.92	172.36	37.56	129.44
35	E7a_E8a	KnownJunction	0	59.68	37.65	88.33	35.08	156.18	28.76	117.29
36	ER8a	ExonRegion	0	87.53	38.57	127.22	35.95	238.19	39.69	135.19
37	E8_Da	KnownBoundary	0	51.14	20.20	69.48	21.08	101.78	26.05	69.22
38	E8a_E8b	KnownJunction	0	61.50	21.62	74.67	34.19	0.00	26.91	82.42
39	E8_Ab	KnownBoundary	0	48.38	16.55	72.83	21.00	105.63	13.72	74.84
40	ER8b	ExonRegion	0	110.65	45.68	160.13	52.37	236.31	42.91	163.25
41	ER8c	ExonRegion	0	104.37	40.33	169.82	52.22	252.87	41.61	180.08
42	E8b_E9a	KnownJunction	0	88.24	35.10	169.15	50.34	240.10	47.84	173.88
43	ER9a	ExonRegion	0	83.33	33.61	150.27	48.44	228.05	37.72	170.95
44	E9_Da	KnownBoundary	0	76.19	28.08	133.39	45.00	198.67	29.64	136.81
45	ER9b	ExonRegion	0	85.93	45.11	155.25	47.37	243.71	40.08	166.35
46	E9b_E10a	KnownJunction	0	95.52	55.38	167.40	60.74	276.40	46.04	197.26
47	ER10a	ExonRegion	0	74.18	33.32	118.47	33.71	228.90	38.10	156.52
48	E10_Da	NovelBoundary	1	45.60	10.22	73.49	12.35	48.83	4.34	25.12
49	E10a_E11a	KnownJunction	0	44.88	18.99	81.64	23.05	217.87	29.00	114.51
50	ER11a	ExonRegion	0	47.49	26.25	112.47	25.03	207.90	22.98	142.20
51	E11a_E12a	KnownJunction	1	41.99	18.18	66.98	11.43	160.26	28.51	124.74
52	E11a_E13a	NovelJunction	1	13.15	9.77	32.30	13.60	15.01	7.05	5.07
53	ER12a	ExonRegion	0	42.33	18.26	58.75	9.72	168.51	19.85	119.90
54	E12a_E13a	KnownJunction	0	44.09	20.83	57.22	11.68	178.98	7.64	103.26
55	ER13a	ExonRegion	0	43.99	21.79	105.75	21.19	227.08	21.23	138.90
56	E13_Da	NovelBoundary	1	18.06	9.04	23.21	20.37	11.69	4.72	9.70
57	E13a_E14a	KnownJunction	0	43.43	20.65	86.67	18.31	171.51	20.18	125.20
58	I13	Intron	0	12.04	3.95	25.05	6.10	11.15	2.60	15.57
59	I13_SR1	SilentIntronRegion	0	17.37	5.43	24.67	4.34	14.00	2.92	13.65
60	I13_AR1	ActiveIntronRegion	0	17.65	5.20	31.68	5.91	12.18	3.04	12.65
61	I13_SR2	SilentIntronRegion	0	11.83	3.09	24.89	5.41	10.66	2.09	15.36
62	I13_AR2	ActiveIntronRegion	0	8.96	3.95	22.00	6.99	10.84	2.80	17.51
63	E14_Aa	NovelBoundary	1	20.01	1.63	34.93	13.63	19.57	0.00	19.13
64	ER14a	ExonRegion	0	52.55	31.09	115.63	35.77	207.36	25.36	156.96
65	E14a_E15a	KnownJunction	0	54.08	36.41	109.67	41.31	206.92	32.86	136.74
66	ER15a	ExonRegion	0	51.21	30.86	103.46	35.58	187.03	39.29	143.68
67	E15a_E16a	KnownJunction	0	47.25	27.85	82.43	32.05	148.05	28.33	116.59
68	ER16a	ExonRegion	0	42.94	27.28	69.00	30.90	143.66	32.94	109.00
69	E16a_E17a	KnownJunction	0	60.12	26.72	83.87	37.79	148.53	32.27	112.14
70	ER17a	ExonRegion	0	62.82	36.07	98.02	43.57	165.91	45.75	142.17
71	E17_Da	KnownBoundary	0	28.91	23.51	48.13	16.50	81.61	21.63	69.64
72	E17a_E17b	KnownJunction	0	32.60	32.34	67.47	22.30	0.00	21.90	84.61
73	E17_Ab	KnownBoundary	0	25.25	7.12	40.11	17.45	50.55	7.80	44.79
74	ER17b	ExonRegion	0	58.25	40.58	104.86	42.40	152.58	40.70	142.20
75	ER17c	ExonRegion	0	59.83	33.73	99.15	46.06	160.45	44.98	133.75
76	E17b_E18a	KnownJunction	0	63.04	32.63	95.26	43.21	201.76	58.96	132.32
77	ER18a	ExonRegion	0	55.22	34.48	92.38	43.50	155.32	44.11	133.12
78	E18_Da	KnownBoundary	0	42.31	32.13	79.60	42.89	126.51	27.63	117.59
79	ER18b	ExonRegion	0	42.76	36.23	82.36	48.80	167.74	37.57	134.02
80	E18b_E19a	KnownJunction	0	44.16	40.98	86.84	33.38	182.39	54.43	129.13
81	ER19a	ExonRegion	0	39.60	39.54	76.56	38.23	174.11	41.76	130.94
82	E19a_E20a	KnownJunction	0	47.97	42.53	85.83	26.82	196.32	43.71	125.11
83	ER20a	ExonRegion	0	54.95	39.06	106.25	43.49	212.54	32.46	134.05
84	E20a_E21a	KnownJunction	0	65.39	45.50	123.70	32.64	251.83	33.98	104.00
85	ER21a	ExonRegion	0	71.17	61.87	117.81	36.07	276.57	42.22	135.45
86	E21a_E22a	KnownJunction	0	75.52	54.54	132.37	55.54	331.43	46.31	151.57
87	ER22a	ExonRegion	0	87.73	55.87	157.27	64.71	298.42	47.86	163.33
88	E22a_E23a	KnownJunction	0	105.58	59.06	152.58	73.31	330.76	56.47	166.57
89	ER23a	ExonRegion	0	89.52	59.73	144.49	72.85	281.20	52.00	170.49
90	E23a_E24a	KnownJunction	0	75.22	46.00	116.00	54.72	259.60	44.73	136.32
91	ER24a	ExonRegion	0	101.60	45.05	119.76	53.50	204.97	58.37	90.07