Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HIPK1	Gene	0	219.78	313.52	221.11	189.14	132.34	201.70	72.34
2	361587	Transcript	0	1.69	0.00	0.14	0.00	0.00	0.00	0.18
3	369559	Transcript	0	13.63	12.24	11.06	6.19	0.49	0.45	0.96
4	369554	Transcript	0	0	0	0	0	0	0	0
5	369561	Transcript	0	0	0	0	0	0	0	0
6	369555	Transcript	0	0	0	0	0	0	0	0
7	369558	Transcript	0	1.92	7.29	1.02	1.25	3.04	0.00	1.18
8	340480	Transcript	0	10.03	3.35	4.16	0.64	1.26	0.64	1.04
9	369553	Transcript	0	0.34	0.00	0.30	0.00	0.00	0.00	0.00
10	406344	Transcript	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E1a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	9.06	24.36	1.35	5.25	0.00	5.82	1.35
14	E2a_E4a	KnownJunction	1	7.86	35.68	1.91	6.18	0.00	6.27	2.32
15	ER3a	ExonRegion	0	19.10	63.37	19.74	33.34	6.44	48.25	3.00
16	E3a_E4a	KnownJunction	0	61.70	283.81	71.54	146.70	11.16	210.65	15.86
17	ER4a	ExonRegion	0	277.09	507.64	265.27	281.69	122.79	250.12	75.41
18	E4a_E6a	KnownJunction	0	175.76	328.79	188.51	173.46	124.14	152.41	58.37
19	E4a_E9a	NovelJunction	0	6.44	15.42	13.67	20.29	0.00	13.48	0.00
20	ER5a	ExonRegion	0	20.06	6.71	8.33	1.28	2.51	1.28	2.07
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	252.11	368.34	275.73	220.51	131.18	180.20	71.16
23	E6a_E8c	KnownJunction	0	266.86	360.94	297.03	197.87	130.20	169.13	69.89
24	E6a_E9a	NovelJunction	1	37.24	39.41	29.92	36.44	1.18	45.67	4.74
25	ER7a	ExonRegion	0	0.69	0.00	0.59	0.00	0.00	0.00	0.00
26	E7a_E8b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E8_Ac	NovelBoundary	1	132.62	7.99	116.04	3.87	1.06	0.00	2.41
28	ER8a	ExonRegion	0	5.07	0.00	0.41	0.00	0.00	0.00	0.54
29	ER8b	ExonRegion	0	29.29	20.31	18.40	11.17	6.87	7.85	4.59
30	ER8c	ExonRegion	0	311.22	362.23	329.60	187.83	138.11	192.92	73.49
31	E8a_E9a	KnownJunction	0	311.82	284.99	373.27	162.11	148.37	174.41	72.80
32	ER9a	ExonRegion	0	379.77	343.54	400.16	186.90	139.94	213.79	72.25
33	E9_Da	NovelBoundary	1	180.42	8.01	163.84	3.25	0.88	1.45	0.00
34	E9a_E10a	KnownJunction	0	386.67	389.82	403.10	215.02	149.91	268.37	73.96
35	ER10a	ExonRegion	0	478.89	523.83	515.24	301.09	187.95	312.11	116.27
36	E10a_E11a	KnownJunction	0	302.57	498.53	420.42	296.19	169.69	267.22	111.37
37	E10a_E12a	NovelJunction	0	16.62	33.97	5.56	24.03	3.50	14.47	2.95
38	ER11a	ExonRegion	0	339.55	504.76	393.09	302.99	179.66	246.79	105.71
39	E11a_E12a	KnownJunction	0	213.98	489.62	314.97	306.02	108.35	259.74	100.10
40	ER12a	ExonRegion	0	289.19	539.91	372.96	313.60	184.32	289.26	134.53
41	E12a_E13a	KnownJunction	0	226.63	550.89	312.94	316.04	140.44	350.17	123.72
42	ER13a	ExonRegion	0	220.12	548.40	286.06	309.56	146.04	267.56	120.59
43	E13a_E14a	KnownJunction	0	293.99	530.50	354.69	278.28	206.23	324.71	153.09
44	E13a_E15a	KnownJunction	0	2.40	4.73	1.78	7.40	7.65	1.66	0.00
45	ER14a	ExonRegion	0	151.58	392.59	188.76	220.03	100.75	212.80	77.08
46	E14a_E15a	KnownJunction	0	123.56	342.29	154.64	246.80	98.41	167.39	78.97
47	I14	Intron	1	54.22	14.83	24.67	4.26	1.81	1.83	1.34
48	I14_SR1	SilentIntronRegion	1	54.26	14.84	24.69	4.27	1.81	1.84	1.34
49	E15_Aa	NovelBoundary	1	65.14	23.49	24.39	5.55	4.08	3.43	3.08
50	ER15a	ExonRegion	0	188.29	486.71	228.33	308.50	141.33	273.68	106.23
51	E15a_E16a	KnownJunction	0	241.09	593.39	254.64	367.27	190.00	297.21	120.00
52	ER16a	ExonRegion	0	248.13	674.36	299.98	413.32	164.45	353.42	126.06
53	E16a_E17a	KnownJunction	0	265.90	682.79	324.12	395.94	167.02	385.17	144.10
54	ER17a	ExonRegion	0	254.89	655.99	316.46	378.73	195.31	367.40	131.98
55	E17a_E18a	KnownJunction	0	183.76	552.36	238.45	319.92	130.34	277.78	128.50
56	ER18a	ExonRegion	0	181.09	512.95	223.57	278.27	146.26	297.81	109.66
57	E18a_E19a	KnownJunction	0	179.00	387.19	182.26	255.71	94.36	271.13	100.21
58	ER19a	ExonRegion	0	156.90	424.81	157.19	266.44	94.76	264.73	82.33
59	E19_Da	KnownBoundary	0	23.67	15.79	18.19	11.43	0.00	1.61	1.36
60	E19a_E20a	KnownJunction	0	126.38	394.07	122.74	250.13	93.53	233.27	58.95
61	ER19b	ExonRegion	0	13.63	12.24	11.06	6.19	0.49	0.45	0.96
62	ER20a	ExonRegion	0	167.33	303.76	165.96	202.49	87.37	211.14	68.33
63	E20_Da	KnownBoundary	0	179.82	150.85	188.57	103.00	85.32	187.81	49.95
64	ER20b	ExonRegion	0	231.00	214.67	214.70	138.65	157.59	181.29	67.60
65	ER20c	ExonRegion	0	1.92	7.29	1.02	1.25	3.04	0.00	1.18