Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	USP24	Gene	0	135.02	74.89	158.32	108.43	108.60	123.76	95.14
2	294383	Transcript	0	57.97	44.15	74.95	68.24	29.26	55.61	34.81
3	407756	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG12_AR1	ActiveIntergenicRegion	0	12.07	8.62	8.53	7.41	4.49	7.12	1.98
5	IG12_SR1	SilentIntergenicRegion	0	0.78	10.65	0.12	17.12	0.28	19.62	2.60
6	ER1a	ExonRegion	0	1.32	7.48	1.00	12.17	0.00	10.10	2.97
7	ER1b	ExonRegion	0	2.86	20.03	2.15	34.27	0.20	26.16	4.66
8	E1_Da	KnownBoundary	0	6.66	11.77	4.31	27.69	1.06	20.10	2.09
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1c	ExonRegion	0	2.46	8.18	2.35	15.03	1.84	13.16	2.04
11	E1b_E2a	KnownJunction	0	6.54	19.60	13.16	24.87	8.28	25.57	8.80
12	ER2a	ExonRegion	0	29.88	44.83	54.19	64.53	18.66	63.74	28.06
13	E2a_E3a	KnownJunction	0	46.38	77.50	78.56	97.34	30.71	93.93	34.78
14	ER3a	ExonRegion	0	60.41	68.68	99.58	92.88	29.54	107.42	55.81
15	E3a_E4a	KnownJunction	0	65.88	68.75	107.75	81.14	35.87	110.52	63.13
16	ER4a	ExonRegion	0	77.65	67.70	115.09	96.26	34.56	100.04	55.91
17	E4a_E5a	KnownJunction	0	82.50	67.49	98.80	84.98	24.27	84.61	41.73
18	ER5a	ExonRegion	0	98.96	68.94	138.43	86.37	46.83	79.77	58.46
19	E5a_E6a	KnownJunction	0	100.57	51.96	133.27	72.22	46.31	64.29	49.33
20	ER6a	ExonRegion	0	118.60	93.38	153.84	100.97	53.59	97.81	60.56
21	E6a_E7a	KnownJunction	0	103.13	93.16	109.67	92.60	64.78	86.43	47.11
22	ER7a	ExonRegion	0	134.94	107.42	162.11	113.70	61.28	90.89	64.39
23	E7a_E8a	KnownJunction	0	135.32	97.57	175.65	106.79	45.23	76.70	68.26
24	ER8a	ExonRegion	0	148.15	114.01	181.70	112.79	69.88	94.57	75.10
25	E8a_E9a	KnownJunction	0	125.51	102.33	138.66	103.87	68.97	95.11	71.94
26	E9_Aa	NovelBoundary	1	55.88	3.63	53.40	0.00	0.00	0.00	3.93
27	ER9a	ExonRegion	0	135.15	86.87	145.74	97.11	54.08	76.34	74.74
28	E9a_E10a	KnownJunction	0	144.47	70.41	153.26	117.85	74.97	66.70	60.34
29	ER10a	ExonRegion	0	151.58	93.15	177.19	123.62	82.41	79.54	85.26
30	E10_Da	NovelBoundary	1	58.03	0.00	65.66	0.00	0.00	0.00	1.30
31	E10a_E11a	KnownJunction	0	154.43	80.63	169.81	132.23	69.02	85.81	79.74
32	ER11a	ExonRegion	0	144.05	72.01	177.52	106.95	68.65	89.88	80.32
33	E11a_E12a	KnownJunction	0	108.94	61.16	123.64	100.26	76.58	76.81	62.77
34	ER12a	ExonRegion	0	103.04	62.45	149.08	101.82	58.68	79.45	57.72
35	E12a_E13a	KnownJunction	0	101.37	44.90	140.38	102.95	68.97	88.20	57.76
36	ER13a	ExonRegion	0	92.28	53.06	136.76	97.00	48.11	71.51	50.89
37	E13a_E14a	KnownJunction	0	90.73	63.05	125.21	99.56	38.27	64.64	58.73
38	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER14a	ExonRegion	0	110.42	58.74	146.43	99.13	47.60	72.04	57.96
40	E14a_E15a	KnownJunction	0	113.12	49.50	135.31	88.97	55.40	76.89	48.90
41	ER15a	ExonRegion	0	105.49	54.74	124.63	87.04	45.29	77.36	58.00
42	E15a_E16a	KnownJunction	0	95.08	59.61	91.86	79.08	43.52	65.87	41.95
43	E15a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER16a	ExonRegion	0	83.94	51.81	95.93	86.79	37.29	69.58	50.05
45	E16a_E17a	KnownJunction	0	57.75	45.32	80.47	83.14	40.32	56.15	48.68
46	ER17a	ExonRegion	0	79.74	63.86	104.12	87.77	47.10	83.74	57.03
47	E17a_E18a	KnownJunction	0	90.96	61.03	112.10	82.38	41.82	71.98	46.81
48	E18_Aa	NovelBoundary	1	37.39	0.00	50.43	2.38	0.00	0.00	1.78
49	ER18a	ExonRegion	0	72.27	49.62	93.98	74.73	36.27	62.04	46.49
50	E18a_E19a	KnownJunction	0	79.24	56.04	97.91	71.95	37.60	54.24	41.80
51	ER19a	ExonRegion	0	116.16	50.36	150.86	83.42	44.66	77.89	63.22
52	E19a_E20a	KnownJunction	0	102.36	39.14	102.65	56.95	43.39	88.09	49.77
53	ER20a	ExonRegion	0	98.24	44.20	140.13	88.79	46.96	62.59	69.61
54	E20a_E21a	KnownJunction	0	80.23	44.03	144.13	68.57	47.90	55.07	54.80
55	ER21a	ExonRegion	0	87.81	53.75	164.60	80.96	63.67	65.17	67.93
56	E21a_E22a	KnownJunction	0	129.71	43.69	190.57	82.06	81.12	60.84	71.67
57	ER22a	ExonRegion	0	137.26	72.31	220.44	110.25	69.50	95.67	88.49
58	E22a_E23a	KnownJunction	0	148.14	61.79	208.50	107.55	81.51	66.33	80.56
59	ER23a	ExonRegion	0	186.76	85.24	243.66	151.21	100.72	105.28	113.16
60	E23a_E24a	KnownJunction	0	178.27	90.01	211.69	144.59	138.34	111.49	101.80
61	ER24a	ExonRegion	0	237.35	74.02	249.24	116.75	119.76	94.25	96.87
62	E24a_E25a	KnownJunction	0	253.62	93.45	239.02	105.30	112.11	112.91	98.03
63	E25_Aa	NovelBoundary	1	96.70	0.00	103.31	0.00	0.00	1.66	0.67
64	ER25a	ExonRegion	0	280.67	117.50	281.75	132.83	109.70	134.20	121.25
65	E25a_E26a	KnownJunction	0	306.04	133.93	314.34	157.32	122.94	126.07	125.50
66	ER26a	ExonRegion	1	273.76	103.41	282.00	124.30	123.86	106.92	97.52
67	E26a_E27a	KnownJunction	1	196.84	79.37	204.16	110.37	95.90	107.12	71.08
68	ER27a	ExonRegion	0	189.97	79.10	239.02	116.94	90.84	105.27	81.79
69	E27a_E28a	KnownJunction	1	192.62	71.93	242.87	128.44	89.35	142.36	72.82
70	ER28a	ExonRegion	1	207.73	89.49	222.47	116.23	93.10	111.04	72.04
71	E28a_E29a	KnownJunction	1	260.21	139.92	262.91	120.39	98.55	121.40	93.23
72	ER29a	ExonRegion	0	223.63	130.71	244.24	151.78	109.84	135.54	100.40
73	E29a_E30a	KnownJunction	0	218.00	124.21	245.36	157.10	104.18	140.54	108.39
74	ER30a	ExonRegion	0	198.53	112.49	226.38	135.69	90.26	144.24	105.52
75	E30a_E31a	KnownJunction	0	184.54	99.86	188.96	122.13	95.05	155.30	88.97
76	ER31a	ExonRegion	0	134.63	81.50	199.29	107.45	100.03	138.67	111.93
77	E31a_E32a	KnownJunction	0	107.02	68.23	140.81	89.10	84.26	115.96	95.59
78	ER32a	ExonRegion	0	104.31	81.27	158.60	97.78	72.32	139.05	104.71
79	E32a_E33a	KnownJunction	0	87.52	72.33	136.40	104.54	49.68	152.87	94.03
80	ER33a	ExonRegion	0	94.01	98.58	153.80	128.33	75.15	137.75	95.83
81	E33a_E34a	KnownJunction	0	94.73	89.17	155.83	103.16	91.73	134.91	97.97
82	ER34a	ExonRegion	0	108.79	87.83	144.41	107.84	90.13	112.62	100.77
83	E34a_E35a	KnownJunction	0	85.84	63.79	111.80	72.25	69.11	57.59	74.42
84	ER35a	ExonRegion	0	83.89	73.81	108.86	112.03	81.41	78.56	86.32
85	E35a_E36a	KnownJunction	0	88.96	77.92	119.33	113.73	78.75	82.97	86.58
86	E36_Aa	NovelBoundary	1	38.20	1.63	56.66	1.14	0.00	0.00	4.89
87	ER36a	ExonRegion	0	87.36	72.71	112.47	103.79	75.30	88.74	82.87
88	E36a_E37a	KnownJunction	0	81.68	54.36	110.68	104.71	56.18	74.77	70.37
89	ER37a	ExonRegion	0	83.00	65.60	117.61	88.10	70.97	91.60	70.63
90	E37a_E38a	KnownJunction	0	75.74	58.40	91.41	65.13	78.26	84.79	60.94
91	ER38a	ExonRegion	0	77.80	57.15	102.42	81.83	83.11	90.01	82.03
92	E38a_E39a	KnownJunction	0	94.93	53.62	116.51	86.69	75.45	101.73	72.75
93	E38a_E40a	NovelJunction	0	2.50	13.27	7.57	10.13	0.00	14.10	0.83
94	ER39a	ExonRegion	0	82.41	74.48	107.02	92.09	84.13	100.39	83.55
95	E39a_E40a	KnownJunction	0	74.79	78.18	93.54	73.50	74.41	93.85	94.99
96	ER40a	ExonRegion	0	85.90	72.31	123.93	89.72	80.80	96.34	88.81
97	E40a_E41a	KnownJunction	0	92.55	55.12	119.96	85.74	100.21	84.58	86.28
98	ER41a	ExonRegion	0	91.40	54.32	121.34	65.10	81.23	60.83	80.97
99	E41a_E42a	KnownJunction	0	62.54	35.20	89.33	48.95	92.14	44.97	61.77
100	ER42a	ExonRegion	0	134.92	60.04	158.07	101.11	107.47	89.69	85.32
101	E42a_E43a	KnownJunction	0	137.53	63.97	178.49	116.76	83.50	104.57	95.29
102	ER43a	ExonRegion	0	137.63	72.72	157.64	102.42	107.14	89.78	88.49
103	E43a_E44a	KnownJunction	0	100.27	64.94	125.02	83.82	111.71	85.52	78.78
104	ER44a	ExonRegion	0	125.54	58.55	163.01	95.03	99.71	94.59	87.56
105	E44a_E45a	KnownJunction	0	122.62	54.22	185.00	85.17	102.05	92.35	77.25
106	ER45a	ExonRegion	0	148.63	72.95	202.76	93.57	99.73	98.10	86.78
107	E45a_E46a	KnownJunction	0	162.01	71.30	238.96	114.19	95.12	84.37	83.01
108	ER46a	ExonRegion	0	141.40	55.84	189.75	96.03	79.28	78.39	83.27
109	E46a_E47a	KnownJunction	0	127.29	49.47	172.11	78.02	74.78	108.41	58.70
110	ER47a	ExonRegion	0	124.02	53.33	171.89	101.54	72.82	109.24	72.54
111	E47a_E48a	KnownJunction	0	130.32	67.60	165.27	108.31	76.14	150.13	74.97
112	ER48a	ExonRegion	0	140.18	66.65	176.02	103.82	95.35	118.92	75.11
113	E48a_E49a	KnownJunction	0	166.58	53.54	170.17	97.74	114.57	94.09	76.80
114	ER49a	ExonRegion	0	167.73	81.26	170.64	111.56	109.89	129.32	91.48
115	E49a_E50a	KnownJunction	0	135.67	77.47	155.89	101.89	111.67	128.69	68.49
116	ER50a	ExonRegion	0	155.00	93.37	203.52	131.71	116.85	151.56	99.97
117	E50a_E51a	KnownJunction	0	125.49	96.73	208.99	142.80	134.10	153.67	103.85
118	ER51a	ExonRegion	0	143.35	82.10	184.75	125.09	119.13	127.91	96.26
119	E51a_E52a	KnownJunction	0	191.40	82.49	236.74	123.26	160.70	108.91	93.21
120	ER52a	ExonRegion	0	185.94	83.81	221.14	136.41	128.06	123.35	108.26
121	E52a_E53a	KnownJunction	0	229.24	80.15	234.01	109.61	171.03	84.98	111.41
122	E52a_E54a	NovelJunction	0	4.74	11.80	4.77	16.12	2.17	27.34	1.58
123	ER53a	ExonRegion	0	185.95	76.02	218.53	94.35	152.15	104.54	109.61
124	E53a_E54a	KnownJunction	0	166.28	78.60	212.90	106.01	98.50	105.89	131.36
125	ER54a	ExonRegion	0	179.23	85.32	212.16	109.73	142.09	127.99	114.17
126	E54a_E55a	KnownJunction	0	186.26	93.61	215.14	92.06	142.67	119.07	99.07
127	ER55a	ExonRegion	0	197.20	83.23	225.31	109.61	149.61	122.72	102.47
128	E55a_E56a	KnownJunction	0	167.52	64.55	205.35	103.54	107.38	123.12	73.62
129	I55	Intron	0	20.99	9.04	35.06	9.33	4.97	14.18	12.70
130	I55_AR3	ActiveIntronRegion	0	27.84	8.43	43.25	7.80	5.42	14.86	13.12
131	ER56a	ExonRegion	0	198.33	76.94	226.04	106.74	143.72	124.33	99.21
132	E56a_E57a	KnownJunction	0	190.73	75.77	191.67	81.65	135.64	107.49	100.26
133	ER57a	ExonRegion	0	185.57	80.89	227.23	134.97	147.19	149.88	120.71
134	E57a_E58a	KnownJunction	0	176.10	74.27	206.46	137.54	157.47	171.44	114.29
135	ER58a	ExonRegion	0	171.47	91.79	192.43	143.60	150.61	169.52	135.76
136	E58a_E59a	KnownJunction	0	180.99	88.27	188.93	124.27	159.71	187.36	129.96
137	ER59a	ExonRegion	0	170.32	122.90	197.14	145.34	174.75	183.46	153.23
138	E59a_E60a	KnownJunction	0	155.98	123.32	179.87	153.77	209.62	208.90	165.47
139	ER60a	ExonRegion	0	190.31	124.59	182.95	163.23	170.84	194.81	140.67
140	E60a_E61a	KnownJunction	0	139.34	112.28	156.74	174.39	174.05	197.27	122.88
141	ER61a	ExonRegion	0	162.39	121.52	172.01	178.83	175.82	208.87	131.76
142	E61a_E62a	KnownJunction	0	186.96	129.81	176.40	187.33	170.18	196.68	116.50
143	ER62a	ExonRegion	0	142.34	112.10	174.49	162.05	150.24	210.48	124.28
144	E62a_E63a	KnownJunction	0	110.64	113.47	150.57	152.52	118.45	235.09	132.18
145	ER63a	ExonRegion	0	115.64	109.16	173.07	145.11	160.91	195.89	130.47
146	E63a_E64a	KnownJunction	0	131.87	93.68	176.53	134.34	201.46	156.27	117.95
147	ER64a	ExonRegion	0	130.73	100.26	183.43	136.49	165.96	142.76	131.32
148	E64a_E65a	KnownJunction	0	115.04	116.33	161.18	136.30	125.02	133.46	122.12
149	ER65a	ExonRegion	0	119.93	112.34	159.80	151.26	137.49	164.49	126.63
150	E65a_E66a	KnownJunction	0	118.18	102.75	166.21	154.77	163.79	156.35	136.12
151	ER66a	ExonRegion	0	122.95	119.81	183.83	179.38	199.15	196.13	143.34
152	E66a_E67a	KnownJunction	0	114.91	98.91	165.98	164.52	225.11	182.35	136.85
153	ER67a	ExonRegion	0	100.55	109.33	122.40	170.46	142.50	210.33	104.46
154	E67_Da	NovelBoundary	0	18.94	31.34	25.12	33.97	11.09	35.38	24.36
155	E67a_E68a	KnownJunction	0	75.51	79.73	109.80	148.73	121.95	127.78	80.37
156	I67_AR1	ActiveIntronRegion	0	16.93	19.81	20.72	17.19	7.29	29.28	11.01
157	E68_Aa	NovelBoundary	1	30.64	7.91	43.70	7.23	4.89	5.95	9.47
158	ER68a	ExonRegion	0	152.52	71.11	152.52	111.86	161.15	170.21	123.76