Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IL12RB2	Gene	0	4.17	4.98	3.69	9.48	10.06	4.05	4.84
2	262345	Transcript	0	1.43	1.24	1.98	5.23	8.99	2.17	1.77
3	371000	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	0.00	0.00	0.34	0.47	0.88	0.00	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	0.00	0.02	2.62	2.56	9.03	0.00	1.86
7	E2a_E3a	KnownJunction	0	0.00	0.00	2.27	0.00	12.70	0.00	0.69
8	E3_Aa	NovelBoundary	0	0.97	4.65	4.48	15.17	0.00	0.00	1.43
9	ER3a	ExonRegion	0	0.81	3.84	7.25	8.63	15.53	2.91	2.36
10	E3_Da	NovelBoundary	0	0.80	2.65	9.18	15.98	0.00	7.53	0.00
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.75	1.54	15.88	0.00	0.89
12	E4_Aa	NovelBoundary	0	0.70	6.52	6.71	8.56	0.00	6.54	0.79
13	ER4a	ExonRegion	0	1.02	2.38	0.48	3.84	13.42	0.81	1.13
14	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	13.39	0.00	1.78
15	ER5a	ExonRegion	0	2.21	2.00	3.21	3.30	16.30	1.51	1.97
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	1.68	16.32	0.00	1.66
17	ER6a	ExonRegion	0	0.00	0.00	1.27	2.98	9.63	1.30	0.84
18	E6a_E7a	KnownJunction	0	0.00	0.00	1.16	0.00	15.03	0.00	0.89
19	ER7a	ExonRegion	0	1.56	2.45	1.85	3.93	12.63	0.62	1.21
20	E7a_E8a	KnownJunction	0	0.00	0.00	1.57	1.38	9.52	0.00	0.00
21	ER8a	ExonRegion	0	0.68	0.00	2.55	2.21	12.40	0.00	0.89
22	E8a_E9a	KnownJunction	0	0.00	0.00	3.00	2.93	16.46	0.00	0.80
23	E9_Aa	NovelBoundary	0	2.59	9.72	4.94	10.32	0.00	4.98	13.24
24	ER9a	ExonRegion	0	3.90	3.36	4.39	11.30	10.74	2.54	6.62
25	E9_Da	NovelBoundary	0	8.11	2.78	1.51	9.56	0.00	3.00	3.53
26	E9a_E10a	KnownJunction	0	0.00	0.00	0.83	2.74	6.36	0.00	0.00
27	E10_Aa	NovelBoundary	0	3.69	4.86	2.59	14.66	1.04	2.49	2.11
28	ER10a	ExonRegion	0	3.18	1.87	2.31	9.21	9.37	7.93	3.09
29	E10_Da	NovelBoundary	0	3.94	4.60	4.27	14.82	0.00	12.92	7.57
30	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	4.13	0.00	0.00
31	I10	Intron	0	7.38	7.78	6.07	11.92	0.49	9.26	8.19
32	I10_SR1	SilentIntronRegion	0	7.38	7.78	6.08	11.92	0.49	9.26	8.20
33	E11_Aa	NovelBoundary	0	13.07	11.95	9.01	30.53	0.00	20.61	9.47
34	ER11a	ExonRegion	0	5.03	8.31	4.81	8.48	7.82	5.44	3.57
35	E11_Da	NovelBoundary	0	12.17	18.47	6.84	19.45	1.04	10.99	11.12
36	E11a_E12a	KnownJunction	0	0.00	0.00	1.35	1.03	15.17	0.00	0.00
37	E12_Aa	NovelBoundary	0	7.79	13.71	7.23	14.47	0.00	14.34	14.60
38	ER12a	ExonRegion	0	2.45	5.81	3.78	8.96	9.58	7.01	6.70
39	E12_Da	NovelBoundary	0	5.29	8.75	5.35	11.89	0.00	15.92	15.31
40	E12a_E13a	KnownJunction	0	0.00	0.00	2.54	0.00	8.39	0.00	3.35
41	I12	Intron	0	4.73	4.73	3.62	9.20	0.54	6.43	5.20
42	I12_SR1	SilentIntronRegion	0	4.78	4.77	3.63	9.23	0.54	6.51	5.25
43	E13_Aa	NovelBoundary	0	5.44	0.00	5.13	11.68	0.00	7.69	5.42
44	ER13a	ExonRegion	0	2.96	3.34	4.55	8.45	6.94	6.75	5.87
45	E13_Da	NovelBoundary	0	4.62	6.75	4.56	6.94	0.00	8.90	7.98
46	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	1.60	8.62	0.00	1.39
47	E14_Aa	NovelBoundary	0	0.00	4.20	0.76	8.34	1.08	7.85	6.48
48	ER14a	ExonRegion	0	0.64	3.00	3.80	6.77	14.22	3.07	3.25
49	E14_Da	NovelBoundary	0	20.33	8.14	1.75	14.90	0.95	1.31	7.34
50	E14a_E15a	KnownJunction	0	0.00	0.00	0.65	4.09	12.47	0.00	0.60
51	E14a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	I14	Intron	0	8.23	3.49	4.58	8.55	1.08	4.71	5.84
53	I14_AR2	ActiveIntronRegion	0	22.81	5.35	11.46	27.16	5.18	13.80	11.14
54	E15_Aa	NovelBoundary	0	16.76	12.90	9.89	24.08	3.14	15.41	13.76
55	ER15a	ExonRegion	0	4.28	3.71	5.28	10.16	8.15	6.52	4.71
56	E15_Da	NovelBoundary	0	12.95	16.24	10.23	21.24	3.18	16.88	12.37
57	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	1.44	6.36	0.00	0.00
58	I15	Intron	0	9.90	9.18	8.39	20.61	1.88	12.14	9.93
59	I15_AR1	ActiveIntronRegion	0	10.73	6.95	7.56	11.54	2.47	12.80	9.22
60	I15_SR1	SilentIntronRegion	0	9.83	9.38	8.46	21.42	1.83	12.09	10.00
61	E16_Aa	NovelBoundary	0	5.47	14.82	5.60	22.70	0.97	10.99	5.75
62	ER16a	ExonRegion	0	9.24	10.35	5.16	17.42	11.96	6.81	9.41
63	IG43	Intergenic	0	11.40	7.02	14.04	12.86	6.33	6.78	8.17
64	IG43_AR1	ActiveIntergenicRegion	0	6.70	8.69	7.65	15.51	7.58	5.27	10.30
65	IG43_SR2	SilentIntergenicRegion	0	11.49	7.99	10.95	17.01	10.31	6.00	9.94
66	IG43_AR2	ActiveIntergenicRegion	0	5.92	4.08	6.82	9.66	7.76	4.32	4.78
67	IG43_SR3	SilentIntergenicRegion	0	13.21	7.69	15.55	13.04	3.32	8.07	7.93
68	IG43_AR3	ActiveIntergenicRegion	0	13.60	7.48	17.41	12.96	6.02	7.01	10.70
69	IG43_SR4	SilentIntergenicRegion	0	14.81	4.87	27.07	11.64	20.88	6.26	7.49