Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHC2	Gene	0	116.48	255.62	459.68	581.51	39.36	440.27	162.87
2	373416	Transcript	0	3.04	6.44	16.04	28.92	0.98	15.21	6.64
3	257118	Transcript	0	0	0	0	0	0	0	0
4	361167	Transcript	0	0	0	0	0	0	0	0
5	373422	Transcript	1	4.14	10.17	17.42	63.73	3.69	27.06	16.60
6	307890	Transcript	0	32.02	98.83	125.99	223.36	0.00	156.31	55.36
7	373418	Transcript	0	0.00	10.39	0.00	24.61	0.00	18.80	0.22
8	IG42_AR10	ActiveIntergenicRegion	0	4.42	2.76	9.48	23.01	0.66	11.97	3.95
9	ER1a	ExonRegion	0	1.87	7.57	12.15	28.13	0.72	26.92	8.73
10	E1a_E2a	KnownJunction	0	0.62	11.95	21.34	27.17	0.00	33.98	4.76
11	ER2a	ExonRegion	0	3.16	11.58	15.49	36.97	1.42	32.15	5.09
12	E2a_E3a	KnownJunction	0	5.04	18.78	16.25	39.96	1.06	29.67	7.25
13	ER3a	ExonRegion	0	2.77	19.42	18.80	44.19	2.45	36.20	10.59
14	E3a_E4a	KnownJunction	0	6.06	19.07	17.47	52.83	2.03	38.16	11.74
15	ER4a	ExonRegion	0	5.66	12.99	17.03	39.52	1.33	37.90	10.30
16	E4a_E5a	KnownJunction	0	1.65	9.72	6.90	28.39	1.18	18.38	8.80
17	ER5a	ExonRegion	0	3.15	6.14	7.33	21.81	2.21	15.22	5.97
18	E5a_E6a	KnownJunction	0	1.72	1.37	4.12	8.21	0.00	4.85	2.05
19	ER6a	ExonRegion	0	4.32	7.63	15.26	38.15	1.21	30.01	8.00
20	E6a_E7a	KnownJunction	1	2.95	11.22	10.61	38.17	3.37	42.96	7.40
21	ER7a	ExonRegion	0	2.87	8.77	11.38	50.99	2.57	42.47	8.59
22	E7_Ab	KnownBoundary	0	4.82	6.70	18.16	63.04	2.17	52.82	10.98
23	ER7b	ExonRegion	0	6.06	6.55	15.58	50.97	3.53	34.75	10.37
24	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E7b_E8a	KnownJunction	1	4.44	9.41	19.03	63.45	4.15	28.38	14.98
26	ER7c	ExonRegion	0	3.84	10.93	15.81	64.01	3.24	25.75	18.21
27	ER8a	ExonRegion	0	4.86	8.72	20.96	59.16	3.84	29.01	17.35
28	E8a_E10a	KnownJunction	0	4.02	7.15	11.60	31.21	7.19	21.52	9.23
29	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER9b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E9_Da	KnownBoundary	0	0.00	0.00	0.00	1.06	0.00	1.21	0.00
32	E9a_E9c	KnownJunction	0	0.00	0.00	0.00	1.46	0.00	1.55	0.00
33	E9_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER9d	ExonRegion	0	0.00	1.05	0.00	2.26	0.00	2.56	0.00
36	E9_Db	KnownBoundary	0	0.00	3.07	0.00	3.09	0.00	2.63	0.00
37	E9b_E9d	KnownJunction	0	0.00	3.21	0.00	4.85	0.00	4.42	0.00
38	E9_Ad	KnownBoundary	0	0.00	1.18	0.00	4.39	0.00	2.87	0.00
39	ER9e	ExonRegion	0	0.00	3.64	0.00	7.73	0.00	7.36	0.00
40	ER9f	ExonRegion	0	0.00	9.77	0.00	21.50	0.00	16.55	0.15
41	E9_Dc	KnownBoundary	0	0.00	1.37	0.00	8.94	0.00	5.41	0.00
42	E9c_E9e	KnownJunction	0	0.00	23.43	0.00	36.03	0.00	28.06	0.00
43	E9_Ae	KnownBoundary	0	0.00	28.95	0.00	44.13	0.00	40.33	1.33
44	ER9g	ExonRegion	0	0.00	27.54	0.00	66.09	0.00	49.04	0.67
45	ER9h	ExonRegion	0	31.33	130.34	82.89	231.97	7.00	189.52	41.25
46	E9d_E10a	KnownJunction	0	89.56	241.70	249.68	438.69	12.54	286.17	103.39
47	ER10a	ExonRegion	0	165.48	498.97	639.72	981.45	43.25	803.22	193.00
48	E10_Da	NovelBoundary	0	65.27	262.66	264.83	433.13	13.09	327.55	74.88
49	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E10b_E12a	KnownJunction	0	115.51	456.39	558.52	898.91	35.16	698.48	153.72
51	ER10b	ExonRegion	0	120.47	473.25	555.98	915.55	32.03	704.27	158.23
52	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E12a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E12_Ab	NovelBoundary	0	145.54	390.24	666.34	804.90	37.74	659.73	186.95
56	ER12a	ExonRegion	0	139.97	481.64	647.73	950.86	39.43	767.76	183.28
57	ER12b	ExonRegion	0	187.75	512.06	838.49	1091.51	45.76	897.63	271.75
58	ER12c	ExonRegion	0	278.88	535.07	1110.51	1198.38	96.82	993.50	381.27
59	E12b_E13a	KnownJunction	0	245.84	477.12	959.00	1058.69	50.26	822.48	343.14
60	E12b_E14a	NovelJunction	1	0.00	1.00	0.89	6.85	0.00	12.09	0.85
61	ER13a	ExonRegion	0	215.50	557.87	965.03	1236.42	79.83	919.80	367.59
62	E13a_E14a	KnownJunction	0	221.88	543.11	1050.57	1434.56	94.89	1031.60	421.54
63	ER14a	ExonRegion	0	225.46	611.25	955.38	1400.31	88.34	1045.45	428.08
64	E14_Da	KnownBoundary	0	81.23	256.17	326.75	508.50	25.61	396.72	157.43
65	E14a_E14b	KnownJunction	0	97.45	335.72	368.81	699.82	0.00	534.66	160.87
66	E14_Ab	KnownBoundary	0	109.74	258.96	435.45	580.43	21.21	387.66	151.02
67	ER14b	ExonRegion	0	186.73	599.41	766.26	1255.69	56.20	903.07	337.30
68	ER14c	ExonRegion	0	222.20	618.71	908.84	1318.58	79.86	878.83	376.86
69	E14b_E15a	KnownJunction	0	246.78	606.08	1010.81	1247.76	108.76	857.99	404.95
70	ER15a	ExonRegion	0	234.81	652.23	1077.89	1440.18	92.71	956.80	455.38
71	E15_Da	KnownBoundary	1	116.53	334.17	559.98	785.37	39.35	585.92	246.62
72	E15a_E15b	KnownJunction	0	66.13	278.85	396.78	694.18	0.00	427.99	187.11
73	E15_Ab	KnownBoundary	0	100.62	265.81	470.79	623.23	31.35	394.39	188.26
74	ER15b	ExonRegion	0	221.57	678.90	1095.33	1506.12	85.44	1060.08	478.06
75	ER15c	ExonRegion	0	218.43	593.93	898.37	1339.56	81.95	883.19	377.64
76	E15_Db	KnownBoundary	0	82.97	239.10	338.72	507.20	16.41	335.80	127.89
77	E15b_E15c	KnownJunction	0	122.27	284.36	318.49	651.68	0.00	472.45	120.80
78	E15_Ac	KnownBoundary	0	117.55	190.10	325.52	474.96	8.97	325.91	104.59
79	ER15d	ExonRegion	0	217.01	530.65	667.49	1128.00	35.15	768.70	230.85
80	ER15e	ExonRegion	0	246.39	539.10	864.32	1142.07	66.12	773.58	318.03
81	E15_Dc	KnownBoundary	0	107.27	230.87	442.97	516.74	37.28	313.93	162.49
82	E15c_E15d	KnownJunction	0	98.37	260.35	427.78	592.27	0.00	406.58	195.51
83	E15_Ad	KnownBoundary	0	132.38	253.70	411.29	598.69	44.58	412.18	173.21
84	ER15f	ExonRegion	0	234.76	527.05	924.18	1127.46	89.08	732.12	357.31
85	ER15g	ExonRegion	0	228.74	465.26	852.61	1046.34	84.55	700.83	329.71
86	E15d_E16a	KnownJunction	0	0.00	2.55	2.33	4.14	1.18	4.40	0.89
87	E15d_E17a	KnownJunction	0	218.65	377.39	766.14	898.99	78.06	592.78	271.90
88	ER16a	ExonRegion	0	6.07	10.33	29.75	53.70	0.77	26.02	12.39
89	ER17a	ExonRegion	0	218.49	428.48	852.21	991.21	73.65	763.26	284.47
90	ER17b	ExonRegion	0	1.54	3.24	2.94	2.08	0.54	2.86	1.35
91	IG41	Intergenic	0	3.37	5.54	14.68	10.15	0.27	9.63	7.78
92	IG41_SR1	SilentIntergenicRegion	0	3.38	5.54	14.69	10.16	0.27	9.63	7.79