Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UBXN11	Gene	0	17.94	37.37	16.59	30.24	14.87	12.39	10.24
2	374222	Transcript	0	0.00	0.00	0.35	0.00	0.00	0.00	0.52
3	374217	Transcript	0	0	0	0	0	0	0	0
4	374221	Transcript	0	6.63	1.75	3.93	2.71	1.08	1.77	1.14
5	314675	Transcript	0	0.00	0.00	2.05	1.11	0.00	0.00	0.00
6	357089	Transcript	0	0	0	0	0	0	0	0
7	389235	Transcript	0	2.64	14.71	3.22	12.27	6.13	1.55	4.01
8	374223	Transcript	0	1.15	2.57	1.11	2.45	1.57	0.61	0.76
9	374215	Transcript	0	2.19	1.16	2.37	2.26	0.79	0.26	0.21
10	ER1a	ExonRegion	0	0.00	0.00	0.35	0.00	0.00	0.00	0.52
11	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	1.96
12	ER1b	ExonRegion	0	0.27	0.00	0.00	0.00	0.57	0.00	2.35
13	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.20	0.02	0.87	0.32	0.23	0.84	0.74
15	E2_Ab	KnownBoundary	0	0.00	0.00	2.73	1.16	0.00	1.55	0.56
16	ER2b	ExonRegion	1	16.65	4.15	6.89	6.23	6.41	1.84	3.60
17	E2a_E3a	KnownJunction	1	11.65	1.47	4.79	1.68	0.99	1.21	0.79
18	E2a_E4a	KnownJunction	1	46.97	35.70	17.56	15.82	30.04	1.66	14.07
19	E2a_E7a	NovelJunction	0	5.19	15.13	7.34	9.48	17.36	1.66	6.22
20	E2a_E10a	NovelJunction	1	1.03	1.16	3.20	10.62	0.00	0.00	0.89
21	ER2c	ExonRegion	1	32.83	18.11	11.76	13.72	14.80	5.13	9.08
22	ER2d	ExonRegion	1	49.18	31.09	18.49	17.38	26.63	6.71	11.27
23	ER3a	ExonRegion	0	4.66	2.25	3.31	2.56	2.24	2.47	0.88
24	E3a_E4a	KnownJunction	0	3.59	1.52	3.68	3.90	0.00	1.63	1.76
25	ER4a	ExonRegion	0	29.07	20.70	18.38	16.41	10.15	3.25	11.00
26	E5a_E6a	KnownJunction	0	1.70	2.34	3.98	2.30	1.13	0.00	0.00
27	E5a_E6b	KnownJunction	0	7.96	13.21	2.24	9.83	5.79	3.22	4.83
28	E5a_E7a	KnownJunction	0	5.34	30.45	6.19	13.68	3.39	9.14	6.12
29	ER5a	ExonRegion	0	9.78	32.34	10.32	18.70	11.98	8.75	8.49
30	ER6a	ExonRegion	0	4.87	1.13	3.12	4.49	1.24	0.78	0.63
31	ER6b	ExonRegion	1	21.77	9.28	9.26	10.36	10.16	1.18	5.56
32	E6a_E7a	KnownJunction	0	6.59	6.28	7.16	6.72	13.07	0.00	6.86
33	E6a_E11a	KnownJunction	0	0.00	0.00	2.05	1.11	0.00	0.00	0.00
34	ER7a	ExonRegion	0	21.98	39.28	16.97	21.58	18.00	9.70	15.61
35	E7a_E8a	KnownJunction	0	23.77	47.45	15.63	23.11	24.30	10.69	16.65
36	ER8a	ExonRegion	0	18.64	49.59	17.98	21.83	13.83	11.32	16.59
37	E8a_E9a	KnownJunction	1	13.50	55.33	18.02	19.97	4.15	11.66	14.59
38	ER9a	ExonRegion	0	12.11	49.11	12.53	19.79	14.40	15.81	8.22
39	E9a_E10a	KnownJunction	0	13.02	32.71	15.19	15.25	20.66	15.44	6.76
40	E9a_E11a	KnownJunction	0	1.54	5.15	0.52	2.41	3.14	0.00	1.52
41	ER10a	ExonRegion	0	20.69	46.83	19.22	31.02	24.97	14.78	11.42
42	E10a_E11a	KnownJunction	0	20.36	35.73	15.32	41.99	21.85	14.45	12.78
43	I10_AR1	ActiveIntronRegion	0	1.43	10.53	2.88	7.89	0.71	4.84	1.67
44	E11_Aa	NovelBoundary	1	9.58	4.70	8.28	0.00	0.00	0.00	0.76
45	ER11a	ExonRegion	0	27.68	78.75	30.25	50.09	21.85	19.63	17.02
46	E11a_E12a	KnownJunction	0	32.43	71.88	23.97	60.36	26.95	21.71	21.80
47	ER12a	ExonRegion	0	21.78	55.65	22.17	44.95	24.10	21.38	16.31
48	E12_Da	NovelBoundary	0	11.25	16.55	17.04	14.49	5.72	3.00	4.43
49	E12a_E13a	KnownJunction	1	5.72	40.04	17.52	26.87	10.42	13.40	7.78
50	E12_Db	NovelBoundary	0	9.36	7.46	6.06	11.78	3.02	2.68	4.20
51	ER12b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	I12	Intron	0	19.20	29.96	20.31	25.91	10.19	5.37	12.31
53	I12_AR1	ActiveIntronRegion	0	19.24	30.02	20.35	25.96	10.21	5.38	12.34
54	E13_Aa	NovelBoundary	0	22.21	37.17	26.93	49.06	22.27	17.23	21.81
55	ER13a	ExonRegion	0	18.70	65.63	26.98	48.17	27.20	17.64	11.19
56	E13_Da	NovelBoundary	0	4.49	6.67	4.44	9.32	0.00	2.92	5.80
57	E13a_E14a	KnownJunction	0	24.92	65.92	33.40	55.70	26.05	30.82	12.63
58	ER14a	ExonRegion	0	28.75	67.48	31.39	69.11	28.17	25.04	18.62
59	E14_Da	NovelBoundary	1	5.32	12.66	3.09	8.67	0.90	0.00	5.73
60	E14a_E15a	KnownJunction	0	24.22	65.05	39.91	65.15	48.25	21.12	18.30
61	I14	Intron	0	4.56	10.14	4.13	4.30	0.93	1.05	5.51
62	I14_SR1	SilentIntronRegion	0	4.66	10.66	4.34	4.58	0.99	1.12	5.75
63	E15_Aa	NovelBoundary	0	15.50	9.98	14.38	4.23	14.89	3.32	5.16
64	ER15a	ExonRegion	0	33.82	59.07	41.31	76.69	32.59	27.73	21.32
65	E15_Da	NovelBoundary	1	0.77	16.08	3.32	3.60	2.24	0.00	3.45
66	E15a_E16a	KnownJunction	0	31.98	60.29	39.22	78.24	21.02	31.09	23.70
67	ER16a	ExonRegion	0	31.79	78.84	27.05	70.26	22.44	30.05	19.03
68	E16_Da	NovelBoundary	1	0.78	11.66	5.42	6.58	0.00	0.00	3.98
69	E16a_E17a	KnownJunction	0	35.32	67.41	33.21	74.15	44.24	30.26	31.19
70	E17_Aa	NovelBoundary	1	20.60	12.14	18.93	7.23	0.97	0.00	4.23
71	ER17a	ExonRegion	0	22.26	46.44	18.28	50.41	18.31	21.88	11.88
72	E17_Da	KnownBoundary	0	4.71	14.84	3.55	16.20	7.75	2.87	5.53
73	E17a_E17b	KnownJunction	0	2.64	14.71	3.22	12.27	6.13	1.55	4.01
74	ER17b	ExonRegion	0	8.45	11.78	7.39	16.05	4.44	4.82	4.88
75	E17_Ab	KnownBoundary	1	17.17	9.77	13.78	25.06	4.43	7.21	6.16
76	ER17c	ExonRegion	1	13.66	9.33	15.41	18.99	9.32	6.39	3.32
77	ER17d	ExonRegion	0	0.77	0.00	1.69	2.49	0.00	1.23	0.00
78	IG46	Intergenic	0	2.89	9.71	5.43	7.58	0.43	3.18	4.64
79	IG46_AR1	ActiveIntergenicRegion	0	2.90	9.73	5.44	7.60	0.44	3.19	4.66