Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CABC1	Gene	0	43.46	30.70	25.31	13.02	45.37	18.76	5.72
2	366779	Transcript	0	2.77	1.91	3.94	0.44	3.16	0.45	1.14
3	366777	Transcript	0	0.00	0.00	0.05	0.37	0.13	0.00	0.08
4	366778	Transcript	0	5.61	0.00	6.08	0.00	0.00	0.00	0.00
5	366776	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	366775	Transcript	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00
7	405743	Transcript	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	0.18	0.12	0.40	0.00	0.28	0.00	0.10
9	E1a_E2a	KnownJunction	0	4.26	3.36	8.00	0.00	5.37	0.00	2.84
10	ER2a	ExonRegion	0	2.90	3.53	6.06	0.47	3.99	0.00	1.98
11	E2a_E3a	KnownJunction	0	2.92	2.68	4.57	1.33	3.11	0.00	0.56
12	E3_Aa	NovelBoundary	0	51.07	20.47	73.27	14.22	16.74	15.65	39.70
13	ER3a	ExonRegion	0	5.81	4.13	6.46	1.22	5.45	0.00	0.67
14	E3_Da	NovelBoundary	0	130.57	103.61	76.23	57.41	28.79	55.96	48.23
15	E3a_E4a	KnownJunction	0	3.86	0.00	3.26	0.00	2.26	0.00	0.73
16	ER4a	ExonRegion	0	5.07	1.63	7.52	0.56	7.38	0.00	4.02
17	E4a_E5a	KnownJunction	0	0.65	0.00	1.28	0.00	1.18	0.00	0.89
18	E5_Aa	NovelBoundary	1	3.52	10.19	1.51	0.00	2.28	1.37	3.54
19	ER5a	ExonRegion	0	2.33	0.86	6.09	0.71	8.93	0.00	1.34
20	E5a_E6a	KnownJunction	0	0.00	1.31	1.71	0.00	0.00	0.00	0.00
21	ER6a	ExonRegion	0	2.86	2.26	1.88	1.03	0.00	2.02	0.56
22	E6a_E8a	KnownJunction	0	2.37	2.99	0.00	0.00	0.00	3.35	0.00
23	ER7a	ExonRegion	0	0.00	0.00	0.05	0.37	0.13	0.00	0.08
24	E7_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E7_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E7_Ad	KnownBoundary	0	0.00	0.00	0.66	1.54	2.12	1.42	0.69
27	ER7b	ExonRegion	0	0.00	0.00	0.85	1.25	2.02	0.00	0.67
28	ER7c	ExonRegion	0	0.00	0.61	1.35	1.25	2.43	0.00	0.67
29	ER7d	ExonRegion	0	6.09	9.41	3.25	6.28	16.29	12.83	1.16
30	E7a_E8a	KnownJunction	0	1.87	9.46	2.16	4.90	5.35	7.18	2.52
31	E7a_E8c	KnownJunction	0	5.61	0.00	6.08	0.00	0.00	0.00	0.00
32	ER8a	ExonRegion	0	5.15	13.12	3.25	5.11	8.10	9.32	2.02
33	ER8b	ExonRegion	0	25.68	31.79	10.82	10.62	15.64	20.19	3.80
34	E8_Da	KnownBoundary	0	42.13	30.66	21.31	11.08	23.54	21.79	8.31
35	E8a_E9b	KnownJunction	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00
36	E8_Db	KnownBoundary	1	19.83	14.34	12.67	1.65	12.03	19.16	4.24
37	E8b_E8c	NovelJunction	0	16.32	14.42	5.19	4.98	0.00	8.20	0.00
38	E8b_E9c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER8c	ExonRegion	1	47.98	47.78	31.11	11.93	23.57	35.23	7.24
40	E8_Ac	KnownBoundary	0	21.15	29.45	18.01	5.82	10.05	8.66	1.48
41	ER8d	ExonRegion	1	43.37	52.10	32.97	9.70	21.96	29.56	5.85
42	ER8e	ExonRegion	0	33.38	48.05	24.15	13.28	77.58	26.13	5.23
43	E8c_E9a	KnownJunction	0	30.23	36.89	15.76	19.21	101.18	21.47	5.47
44	E9_Aa	NovelBoundary	0	14.57	0.00	5.65	0.00	0.00	0.00	0.00
45	ER9a	ExonRegion	0	47.35	48.08	29.56	16.86	50.81	30.53	8.72
46	E9_Ab	KnownBoundary	0	52.82	32.79	37.05	13.06	44.03	29.96	6.76
47	ER9b	ExonRegion	0	40.02	28.63	25.89	17.10	39.56	24.03	4.81
48	E9_Ac	KnownBoundary	0	37.03	40.46	26.08	19.64	40.07	18.09	4.31
49	ER9c	ExonRegion	0	37.15	40.09	29.62	15.91	39.15	23.34	7.66
50	E9a_E10a	KnownJunction	0	38.10	42.93	28.84	16.31	71.58	12.30	7.75
51	ER10a	ExonRegion	0	43.46	44.51	33.46	9.96	63.57	15.11	8.51
52	E10a_E11a	KnownJunction	1	55.84	45.00	42.06	8.13	55.40	16.94	9.44
53	ER11a	ExonRegion	0	51.61	53.15	35.52	22.28	51.74	20.83	6.57
54	E11a_E12a	KnownJunction	0	57.35	67.89	35.38	24.98	47.42	32.24	4.64
55	ER12a	ExonRegion	0	63.51	63.81	40.49	27.10	67.99	30.11	7.87
56	E12a_E13a	KnownJunction	0	81.20	63.68	43.34	31.72	116.32	33.42	11.11
57	I12_SR1	SilentIntronRegion	0	14.25	3.39	10.38	3.66	3.84	4.53	0.52
58	ER13a	ExonRegion	0	72.78	64.33	45.54	22.33	75.88	27.36	6.65
59	E13_Da	NovelBoundary	0	5.11	3.89	2.07	4.50	0.00	8.42	1.55
60	E13a_E14a	KnownJunction	1	78.09	71.20	61.46	13.90	81.79	39.40	9.27
61	ER14a	ExonRegion	0	58.67	52.98	31.18	17.71	63.96	27.30	10.28
62	E14a_E15a	KnownJunction	0	72.65	63.26	35.77	13.52	91.64	21.01	9.67
63	ER15a	ExonRegion	0	76.65	62.43	47.95	23.56	95.44	26.60	14.64
64	E15a_E16a	KnownJunction	0	79.79	59.32	45.32	21.00	106.46	40.25	15.64
65	ER16a	ExonRegion	0	76.36	62.07	41.76	21.12	113.86	38.85	17.28
66	E16a_E17a	KnownJunction	0	83.02	54.09	52.21	17.42	115.84	31.11	17.90
67	ER17a	ExonRegion	0	96.94	72.79	64.18	24.98	105.45	44.48	16.70
68	E17a_E18a	KnownJunction	0	99.07	90.45	66.72	31.07	137.37	52.31	19.63
69	E18_Aa	NovelBoundary	0	3.49	8.35	4.24	8.61	1.87	1.07	2.01
70	ER18a	ExonRegion	0	110.85	99.57	87.11	33.73	152.37	58.92	20.30
71	E18a_E19a	KnownJunction	0	87.20	90.22	59.21	26.98	157.84	50.54	12.84
72	ER19a	ExonRegion	0	103.87	82.52	73.75	27.06	225.84	38.27	16.81
73	E19a_E20a	KnownJunction	0	136.12	64.31	94.07	28.23	186.57	32.19	16.93
74	E20_Aa	NovelBoundary	0	1.59	1.31	1.55	9.45	0.00	1.10	2.29
75	ER20a	ExonRegion	0	137.93	81.97	83.57	43.59	133.43	49.00	15.35
76	E20a_E21a	KnownJunction	0	97.85	109.34	65.49	39.55	126.49	54.06	11.04
77	ER21a	ExonRegion	0	122.61	68.80	60.98	34.09	109.68	47.90	11.87
78	ER21b	ExonRegion	0	0.00	0.00	0.68	1.25	0.81	0.00	0.00