Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SYT2	Gene	0	2.79	1.86	5.21	17.77	27.42	3.79	0.47
2	367268	Transcript	0	0.00	0.00	0.00	0.00	6.34	0.29	0.00
3	367267	Transcript	0	0.97	0.75	2.01	6.27	9.67	1.76	0.17
4	IG18_AR3	ActiveIntergenicRegion	0	4.99	4.00	3.40	3.87	28.61	3.18	5.56
5	IG18_SR2	SilentIntergenicRegion	0	5.28	4.54	6.49	6.47	32.39	5.78	5.12
6	IG18_AR2	ActiveIntergenicRegion	0	4.51	2.84	3.25	3.61	20.88	5.64	4.22
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	4.41	0.58	0.00
8	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	8.28	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.23	0.41	0.00
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.29	0.00
11	I2_AR2	ActiveIntronRegion	0	2.44	0.90	2.14	10.07	0.50	4.04	0.42
12	ER3a	ExonRegion	0	0.30	0.00	0.44	4.37	13.04	3.40	0.00
13	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	18.70	3.32	0.00
14	I3	Intron	0	3.67	2.23	4.71	28.29	0.91	6.48	0.27
15	I3_SR1	SilentIntronRegion	0	0.90	2.07	3.29	8.96	0.23	5.41	0.00
16	I3_AR1	ActiveIntronRegion	0	4.12	1.86	4.59	30.05	1.25	4.33	0.00
17	I3_SR2	SilentIntronRegion	0	7.77	3.26	7.58	59.87	1.47	12.75	1.30
18	E4_Aa	NovelBoundary	0	8.28	7.75	4.84	98.53	2.07	12.81	3.20
19	ER4a	ExonRegion	0	3.85	2.18	6.04	41.75	20.18	7.83	0.92
20	E4_Da	NovelBoundary	0	2.67	5.88	5.13	38.85	1.96	20.34	3.67
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	13.72	0.00	0.00
22	I4	Intron	0	4.93	3.40	8.23	46.73	1.00	7.21	1.15
23	I4_SR1	SilentIntronRegion	0	4.68	1.85	5.40	33.69	1.00	3.99	1.15
24	I4_AR1	ActiveIntronRegion	0	7.20	4.78	11.42	61.44	0.98	9.40	1.69
25	I4_SR2	SilentIntronRegion	0	2.12	2.97	6.56	39.28	1.04	7.27	0.44
26	E5_Aa	NovelBoundary	0	0.00	2.78	4.17	22.84	10.14	11.85	0.89
27	ER5a	ExonRegion	0	0.49	0.00	2.97	16.76	24.40	6.19	1.28
28	E5_Da	NovelBoundary	0	0.75	3.05	4.66	21.27	1.08	6.03	0.72
29	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	31.72	0.00	0.00
30	I5	Intron	0	3.22	2.85	6.61	38.64	0.46	9.23	0.57
31	I5_SR1	SilentIntronRegion	0	3.23	2.87	6.64	38.81	0.46	9.27	0.57
32	E6_Aa	NovelBoundary	0	2.24	1.34	6.09	33.62	1.18	10.43	2.15
33	ER6a	ExonRegion	0	5.14	2.21	3.15	20.65	26.81	6.10	0.31
34	E6_Da	NovelBoundary	0	1.87	5.52	2.34	24.68	0.97	3.30	0.00
35	E6a_E7a	KnownJunction	0	1.17	0.00	0.00	0.00	24.02	0.00	0.00
36	I6	Intron	0	2.43	1.72	1.39	10.60	0.76	1.73	0.32
37	I6_SR1	SilentIntronRegion	0	2.50	1.41	1.53	8.33	0.63	1.05	0.39
38	I6_AR1	ActiveIntronRegion	0	2.38	2.13	1.24	13.61	0.93	2.63	0.23
39	E7_Aa	NovelBoundary	0	3.62	3.07	12.43	59.28	0.00	12.17	2.08
40	ER7a	ExonRegion	0	3.54	2.18	4.65	29.36	28.49	2.77	0.31
41	E7_Da	NovelBoundary	0	5.51	2.34	6.15	23.24	1.89	4.42	0.89
42	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	29.12	1.42	0.00
43	I7	Intron	0	2.29	1.18	3.58	16.62	0.88	2.86	0.43
44	I7_AR2	ActiveIntronRegion	0	2.64	1.21	4.31	14.40	1.08	4.13	0.53
45	I7_SR2	SilentIntronRegion	0	2.31	1.30	3.47	20.44	0.82	2.25	0.41
46	E8_Aa	NovelBoundary	0	2.72	0.00	2.07	11.92	0.95	2.76	0.00
47	ER8a	ExonRegion	0	1.50	2.37	0.41	14.46	24.80	0.25	0.00
48	E8_Da	NovelBoundary	0	3.39	0.00	3.13	25.47	0.88	3.51	0.00
49	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	18.90	1.37	0.00
50	I8	Intron	0	2.45	1.45	3.76	16.93	0.36	1.20	0.00
51	I8_SR1	SilentIntronRegion	0	2.46	1.45	3.77	16.98	0.36	1.20	0.00
52	E9_Aa	NovelBoundary	0	1.90	0.00	5.91	29.83	0.00	2.68	0.00
53	ER9a	ExonRegion	0	2.00	1.89	3.60	18.17	26.65	2.56	0.00
54	E9_Da	NovelBoundary	0	1.57	0.00	5.50	21.59	1.18	1.66	0.00
55	E9a_E10a	KnownJunction	0	0.00	1.29	0.00	0.00	22.48	0.00	0.00
56	I9	Intron	0	2.97	1.10	4.01	13.41	0.60	3.49	0.23
57	I9_SR1	SilentIntronRegion	0	4.00	1.37	7.85	15.25	0.87	4.47	0.42
58	I9_AR1	ActiveIntronRegion	0	2.39	1.04	2.35	15.59	0.56	4.29	0.16
59	E10_Aa	NovelBoundary	0	3.55	1.63	4.38	29.80	0.00	6.57	0.00
60	ER10a	ExonRegion	0	3.36	1.08	5.01	15.42	32.57	5.20	0.43
61	E10_Da	KnownBoundary	0	3.15	2.71	9.27	19.26	46.52	8.09	0.59
62	ER10b	ExonRegion	0	2.91	2.24	6.04	18.82	28.78	3.58	0.52
63	IG17	Intergenic	0	4.92	4.08	10.23	51.84	1.02	7.75	0.49
64	IG17_SR1	SilentIntergenicRegion	0	4.92	4.09	10.24	51.89	1.02	7.75	0.49