Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTHFR	Gene	0	38.32	28.23	32.51	11.08	26.42	14.48	36.10
2	376590	Transcript	0	2.57	2.87	2.51	1.38	6.18	0.00	1.29
3	376585	Transcript	0	8.97	5.13	7.75	2.63	7.50	1.43	8.02
4	376583	Transcript	0	0	0	0	0	0	0	0
5	376592	Transcript	0	5.46	9.57	3.46	4.72	4.61	7.68	9.85
6	ER1a	ExonRegion	0	1.42	0.85	0.94	2.76	1.46	0.00	0.27
7	E1a_E4b	KnownJunction	0	3.72	4.89	4.08	0.00	10.90	0.00	2.31
8	E2_Aa	NovelBoundary	1	14.97	17.34	10.65	7.34	3.43	2.87	4.51
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2_Da	NovelBoundary	1	9.88	19.86	5.09	6.01	6.69	7.83	18.01
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	Ix	Intron	1	15.91	14.25	13.18	5.15	10.61	3.75	19.95
13	Ix_SR1	SilentIntronRegion	0	16.70	14.74	13.83	5.32	11.10	3.97	20.97
14	E3_Aa	NovelBoundary	0	28.17	14.21	17.62	2.60	10.65	2.71	15.68
15	ER3a	ExonRegion	0	26.91	15.39	23.25	7.89	22.50	4.28	24.07
16	E3_Ab	KnownBoundary	0	15.22	15.66	16.78	4.50	6.82	15.70	17.57
17	ER3b	ExonRegion	0	11.49	8.15	13.49	4.37	7.35	8.71	14.84
18	E3_Da	NovelBoundary	0	15.32	8.35	13.32	4.44	12.79	3.73	13.27
19	E3a_E4b	KnownJunction	0	1.03	1.34	1.98	1.68	0.00	2.17	1.65
20	E4_Aa	NovelBoundary	0	25.74	20.94	15.59	7.59	9.96	8.63	18.96
21	ER4a	ExonRegion	1	6.19	15.77	3.67	6.70	6.58	11.36	16.76
22	E4_Ab	KnownBoundary	1	15.87	22.07	3.13	14.90	6.27	9.86	20.25
23	ER4b	ExonRegion	0	33.50	30.42	28.76	8.61	17.14	16.03	34.28
24	E4a_E5a	KnownJunction	0	31.41	27.51	24.88	14.60	24.39	12.30	39.87
25	E5_Aa	NovelBoundary	0	6.21	14.50	3.94	4.12	0.00	6.16	4.44
26	ER5a	ExonRegion	0	28.10	40.91	27.60	13.34	27.25	11.70	44.11
27	E5_Da	NovelBoundary	1	6.31	11.27	8.75	13.71	0.95	1.26	9.80
28	E5a_E6a	KnownJunction	1	29.87	32.24	21.61	10.57	37.60	6.08	52.14
29	Ix	Intron	0	13.45	7.16	10.50	4.62	3.59	5.10	5.37
30	Ix_SR1	SilentIntronRegion	0	27.28	6.97	13.35	4.89	5.41	7.31	6.93
31	E6_Aa	NovelBoundary	0	19.61	11.17	9.14	3.98	5.35	4.74	6.78
32	ER6a	ExonRegion	0	56.68	43.45	38.37	10.41	56.05	13.55	64.85
33	E6a_E7a	KnownJunction	0	38.02	35.89	31.49	14.58	27.32	8.04	46.06
34	E7_Aa	NovelBoundary	1	13.72	6.33	12.23	0.00	1.08	4.45	2.48
35	ER7a	ExonRegion	0	54.50	41.04	45.75	17.64	50.84	20.05	59.85
36	E7a_E8a	KnownJunction	1	31.36	50.60	30.05	9.13	29.53	27.63	50.83
37	ER8a	ExonRegion	0	30.54	33.34	27.93	11.77	26.13	12.94	32.75
38	E8_Da	NovelBoundary	0	7.24	9.69	9.84	3.28	1.15	4.88	7.54
39	E8a_E9a	KnownJunction	1	19.99	21.57	15.78	6.53	14.68	2.95	29.42
40	ER9a	ExonRegion	1	29.86	27.08	28.11	9.27	26.38	5.71	38.94
41	E9a_E10a	KnownJunction	1	20.98	39.99	26.97	11.43	25.75	8.84	37.69
42	ER10a	ExonRegion	0	33.67	36.44	38.01	18.38	25.76	14.39	47.80
43	E10_Da	NovelBoundary	1	16.59	4.07	16.37	4.17	0.99	1.23	2.32
44	E10a_E11a	KnownJunction	0	36.15	29.50	37.55	9.81	23.88	23.61	51.38
45	ER11a	ExonRegion	0	42.07	24.04	37.70	12.63	20.11	15.71	42.24
46	E11a_E12a	KnownJunction	0	65.57	20.83	36.64	18.02	29.09	12.86	40.80
47	ER12a	ExonRegion	0	84.11	27.76	57.21	12.57	46.53	12.60	57.88
48	E12a_E13a	KnownJunction	0	100.59	32.79	72.17	14.14	47.60	13.29	67.80
49	ER13a	ExonRegion	0	81.84	40.86	60.30	15.61	43.20	17.54	66.26
50	E13a_E14a	KnownJunction	0	52.79	36.04	41.13	10.73	45.18	23.74	61.93
51	E14_Aa	NovelBoundary	0	5.92	11.06	5.82	7.10	0.00	3.16	4.21
52	ER14a	ExonRegion	0	44.98	36.34	41.18	10.54	40.20	18.05	55.93
53	E14_Da	KnownBoundary	0	30.54	24.88	27.73	8.13	30.78	6.67	29.04
54	ER14b	ExonRegion	0	30.32	32.74	29.03	11.25	21.21	14.95	34.93
55	E14_Db	KnownBoundary	0	51.91	14.76	35.93	12.90	32.07	4.96	31.94
56	ER14c	ExonRegion	0	51.42	27.72	39.95	12.29	30.76	19.42	36.61
57	ER14d	ExonRegion	0	4.74	3.36	3.25	2.74	2.65	4.00	2.95