Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C1orf86	Gene	0	9.21	18.32	21.39	29.07	22.71	16.56	30.20
2	378558	Transcript	0	0.00	1.91	1.19	0.48	2.47	2.86	1.01
3	378545	Transcript	0	0.17	0.00	1.00	1.01	0.47	1.85	0.52
4	401813	Transcript	0	0	0	0	0	0	0	0
5	359030	Transcript	0	0	0	0	0	0	0	0
6	400919	Transcript	1	3.04	2.87	16.88	9.69	4.00	5.36	5.87
7	378546	Transcript	0	0	0	0	0	0	0	0
8	400918	Transcript	0	0	0	0	0	0	0	0
9	378543	Transcript	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	0.00	1.19	0.54	0.00	2.08	1.28	0.00
11	E1a_E3a	KnownJunction	0	0.00	2.92	0.89	1.44	1.98	1.66	0.00
12	ER2a	ExonRegion	0	0.50	0.00	1.28	1.48	1.40	0.88	0.71
13	E2a_E3a	KnownJunction	0	0.00	0.00	1.71	1.54	0.00	3.27	0.86
14	ER3a	ExonRegion	1	0.85	0.55	1.39	0.24	3.57	8.30	1.16
15	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.39	0.00
16	E3a_E6a	KnownJunction	0	0.00	1.63	2.13	0.00	3.34	5.63	3.04
17	E4_Ad	NovelBoundary	0	6.91	5.39	8.87	1.06	16.32	8.87	15.28
18	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER4b	ExonRegion	0	1.24	1.53	1.24	0.92	5.95	5.12	4.05
20	ER4c	ExonRegion	1	3.84	4.86	4.06	3.74	22.68	15.94	10.79
21	ER4d	ExonRegion	0	8.11	11.27	8.64	16.69	52.35	20.72	18.73
22	E4a_E5a	KnownJunction	1	14.97	15.92	9.33	25.38	6.18	14.87	32.32
23	E4a_E6a	KnownJunction	0	0.00	1.23	0.65	2.68	1.18	1.39	2.49
24	E5_Aa	NovelBoundary	0	4.06	5.44	13.65	15.85	2.26	6.38	6.72
25	ER5a	ExonRegion	0	18.35	35.33	19.90	36.46	21.25	29.76	54.95
26	E5a_E6a	KnownJunction	0	55.78	58.80	60.21	63.56	35.92	51.62	140.56
27	ER6a	ExonRegion	0	37.01	82.78	52.25	101.04	104.13	70.68	150.06
28	E6a_E7a	KnownJunction	1	23.35	62.76	21.67	83.79	67.91	58.93	123.71
29	E6a_E8a	NovelJunction	0	0.77	3.13	4.86	8.86	0.97	0.00	0.86
30	E6a_E10a	KnownJunction	0	2.37	6.70	7.79	14.90	13.35	5.63	17.05
31	I6	Intron	0	6.78	5.34	9.21	6.93	13.40	1.59	6.48
32	I6_AR1	ActiveIntronRegion	0	6.79	5.34	9.21	6.93	13.41	1.59	6.48
33	E7_Aa	NovelBoundary	0	2.90	2.60	2.96	11.22	0.97	5.17	5.93
34	ER7a	ExonRegion	1	20.07	68.75	30.53	75.40	52.25	44.79	114.12
35	E7_Da	KnownBoundary	1	26.65	91.24	36.39	75.80	39.58	50.17	129.44
36	E7a_E8a	KnownJunction	0	0.00	0.00	4.86	3.71	0.90	0.00	0.89
37	ER7b	ExonRegion	1	7.69	33.34	14.15	37.12	44.94	19.74	43.44
38	ER7c	ExonRegion	0	0.00	2.43	1.35	1.25	2.43	0.00	3.15
39	I7	Intron	0	2.22	1.72	11.48	3.55	1.92	1.75	2.70
40	I7_AR2	ActiveIntronRegion	0	3.38	2.20	17.40	4.09	2.66	2.25	3.56
41	E8_Aa	NovelBoundary	1	5.56	1.63	27.88	9.43	5.81	6.00	2.52
42	ER8a	ExonRegion	1	1.82	2.55	20.10	9.42	1.06	7.21	2.44
43	E8_Da	KnownBoundary	1	2.72	4.54	32.55	16.77	2.77	10.83	4.63
44	ER8b	ExonRegion	1	7.05	5.93	50.15	26.94	6.82	12.91	8.34
45	E8b_E9a	KnownJunction	0	1.77	0.00	5.12	0.00	0.99	4.13	3.81
46	E8b_E10a	NovelJunction	1	7.34	5.46	51.47	24.95	5.42	8.66	2.87
47	ER9a	ExonRegion	0	3.32	1.60	5.46	4.87	4.85	1.55	6.78
48	E9a_E10a	KnownJunction	0	0.00	3.97	6.80	6.96	3.34	2.84	4.53
49	I9	Intron	0	7.78	2.06	9.23	3.47	10.67	0.38	6.67
50	I9_AR1	ActiveIntronRegion	0	7.81	2.07	9.27	3.48	10.71	0.38	6.70
51	E10_Aa	NovelBoundary	0	6.74	1.52	6.61	4.80	13.74	0.00	2.22
52	ER10a	ExonRegion	0	6.99	9.88	21.00	25.01	14.78	9.33	17.92
53	E10_Da	KnownBoundary	1	8.36	3.89	18.38	13.33	53.16	0.00	21.80
54	ER10b	ExonRegion	0	6.19	10.34	17.24	25.22	12.54	8.56	13.28