Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NOL9	Gene	0	55.08	35.27	119.19	50.10	86.53	42.22	94.81
2	377705	Transcript	0	67.62	41.67	148.03	61.09	99.38	50.11	113.42
3	ER1a	ExonRegion	0	5.29	13.94	11.92	18.91	6.67	14.47	18.99
4	E1a_E2a	KnownJunction	0	22.70	42.48	51.14	39.69	32.99	26.32	37.94
5	ER2a	ExonRegion	0	88.27	66.65	160.93	90.97	89.51	60.19	80.27
6	E2a_E3a	KnownJunction	0	123.59	73.72	229.05	119.15	114.73	90.15	100.58
7	ER3a	ExonRegion	0	113.61	60.58	200.20	88.16	133.22	67.42	105.71
8	E3_Da	NovelBoundary	0	36.20	5.20	23.44	4.71	13.76	4.72	20.71
9	E3a_E4a	KnownJunction	0	59.23	31.39	145.90	48.82	94.70	47.33	64.33
10	E3a_E7a	NovelJunction	0	6.84	8.56	8.58	18.80	11.60	9.65	7.58
11	I3	Intron	0	22.43	3.73	14.06	5.45	14.73	0.63	10.38
12	I3_AR1	ActiveIntronRegion	0	16.33	1.37	11.50	3.74	12.96	0.00	4.94
13	I3_AR2	ActiveIntronRegion	0	28.89	6.43	17.53	7.89	20.02	1.47	17.00
14	I3_SR1	SilentIntronRegion	0	18.44	1.92	11.46	3.53	9.45	0.00	5.68
15	E4_Aa	NovelBoundary	0	16.51	1.10	12.66	4.44	5.97	4.02	19.00
16	ER4a	ExonRegion	0	58.33	38.13	139.49	55.47	93.11	42.51	111.53
17	E4a_E5a	KnownJunction	0	60.80	27.32	139.06	62.28	79.67	42.80	102.41
18	ER5a	ExonRegion	0	66.23	33.93	148.78	61.58	90.75	44.50	118.03
19	E5a_E6a	KnownJunction	0	74.32	40.59	184.52	77.64	95.39	42.72	143.96
20	E5a_E7a	NovelJunction	0	10.11	3.97	12.29	7.18	10.72	4.66	3.15
21	ER6a	ExonRegion	0	84.45	35.12	199.65	74.26	126.82	56.80	134.98
22	E6a_E7a	KnownJunction	0	73.15	36.73	166.22	59.17	147.49	46.18	125.72
23	ER7a	ExonRegion	0	94.61	45.24	218.34	75.84	127.00	71.01	142.29
24	E7_Da	NovelBoundary	1	4.56	11.51	4.89	0.00	4.38	0.00	4.43
25	E7a_E8a	KnownJunction	0	51.42	28.11	135.66	65.91	74.00	53.33	108.13
26	ER8a	ExonRegion	0	88.54	52.11	207.45	74.44	143.59	73.91	160.29
27	E8_Da	NovelBoundary	0	35.68	25.98	44.91	27.17	11.92	23.96	18.80
28	E8a_E9a	KnownJunction	0	87.79	44.21	233.68	71.11	113.19	63.01	172.36
29	I8	Intron	0	10.09	14.18	14.64	18.00	9.23	9.72	8.15
30	I8_AR1	ActiveIntronRegion	0	11.30	12.67	16.34	19.38	9.58	10.47	10.01
31	I8_SR1	SilentIntronRegion	0	8.37	16.83	12.19	16.16	8.84	8.70	5.37
32	E9_Aa	NovelBoundary	0	4.87	19.97	11.55	20.72	5.12	9.17	12.93
33	ER9a	ExonRegion	0	93.13	51.37	204.17	69.28	184.07	62.27	186.14
34	E9a_E10a	KnownJunction	0	85.90	47.16	170.04	48.98	119.83	54.03	143.56
35	ER10a	ExonRegion	0	54.28	47.09	114.88	46.08	101.63	58.77	128.00
36	E10a_E11a	KnownJunction	0	43.58	51.73	97.82	44.27	74.74	39.10	122.86
37	ER11a	ExonRegion	0	36.01	35.93	77.91	42.05	97.10	37.90	105.43
38	E11a_E12a	KnownJunction	0	54.53	34.02	89.28	40.88	79.51	34.79	123.95
39	ER12a	ExonRegion	0	35.51	20.82	78.66	30.03	65.95	23.14	71.11
40	IG19_SR4	SilentIntergenicRegion	0	58.98	32.08	95.52	54.31	107.12	51.77	96.45
41	IG19_AR5	ActiveIntergenicRegion	0	44.16	29.48	82.94	40.57	80.69	37.18	79.75
42	IG19_SR3	SilentIntergenicRegion	0	21.27	10.50	24.82	14.03	30.43	12.28	20.49
43	IG19_AR3	ActiveIntergenicRegion	0	37.07	29.40	80.94	69.53	61.95	79.33	84.66