Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CASP9	Gene	0	11.30	6.56	7.21	7.70	33.21	18.82	12.08
2	375890	Transcript	0	2.10	1.25	1.04	1.28	5.93	3.91	1.15
3	333868	Transcript	0	0	0	0	0	0	0	0
4	348549	Transcript	0	7.11	5.83	6.41	7.50	24.39	36.05	0.72
5	375874	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	400777	Transcript	0	1.67	0.00	1.58	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	0.37	0.00	0.27	0.00	0.35	0.00	0.20
8	E1_Ab	KnownBoundary	0	0.00	0.00	0.68	0.00	1.04	0.00	0.89
9	ER1b	ExonRegion	0	0.41	0.49	0.52	1.88	4.38	1.67	0.98
10	E1_Ac	KnownBoundary	1	1.03	1.47	2.37	4.09	14.20	5.52	7.34
11	ER1c	ExonRegion	0	3.36	4.88	2.45	4.06	8.59	9.85	6.33
12	E1a_E2a	KnownJunction	0	10.98	11.14	7.52	6.12	10.51	14.58	16.07
13	ER2a	ExonRegion	0	26.31	25.95	22.29	18.51	76.56	53.19	35.11
14	E2a_E3a	KnownJunction	0	14.89	12.32	18.84	19.07	53.11	21.65	27.49
15	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	1.11	3.32	10.75	0.00
16	E2a_E7a	KnownJunction	0	7.11	5.83	6.41	7.50	24.39	36.05	0.72
17	ER3a	ExonRegion	0	26.26	16.73	23.65	14.64	72.03	18.67	38.72
18	E3a_E4a	KnownJunction	0	27.51	13.90	18.15	3.12	88.36	10.21	32.02
19	I3	Intron	0	1.72	1.73	1.25	1.78	2.38	9.33	0.26
20	I3_AR2	ActiveIntronRegion	0	1.95	2.00	1.35	1.76	2.56	10.15	0.30
21	E4_Aa	NovelBoundary	0	0.95	7.15	0.00	2.90	8.11	17.98	1.23
22	ER4a	ExonRegion	0	24.47	14.85	17.95	17.00	73.15	37.04	36.31
23	E4a_E5a	KnownJunction	0	18.81	14.63	12.83	12.60	79.53	31.22	28.94
24	E4a_E6a	KnownJunction	0	1.67	0.00	1.58	0.00	0.00	0.00	0.00
25	E5_Aa	NovelBoundary	0	4.76	3.47	0.00	2.79	0.00	19.32	1.32
26	ER5a	ExonRegion	0	18.87	15.25	11.69	9.34	71.89	27.33	27.37
27	E5_Da	NovelBoundary	0	0.72	4.28	0.00	2.65	0.00	13.72	0.00
28	E5a_E6a	KnownJunction	0	17.39	15.18	11.12	10.94	53.92	16.59	32.99
29	I5_AR6	ActiveIntronRegion	0	3.82	1.08	0.17	0.39	1.46	12.89	0.67
30	I5_AR7	ActiveIntronRegion	0	1.27	0.75	0.35	1.12	2.28	9.24	0.18
31	E6_Aa	NovelBoundary	0	0.00	0.00	0.78	1.44	0.95	19.75	0.53
32	ER6a	ExonRegion	0	24.11	13.80	15.40	11.00	64.30	35.50	44.45
33	E6_Da	NovelBoundary	0	0.00	1.63	1.29	0.00	0.00	13.32	0.00
34	E6a_E7a	KnownJunction	0	18.74	7.99	8.85	7.18	61.30	29.94	31.93
35	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	I6_SR1	SilentIntronRegion	0	0.07	1.03	0.00	1.27	1.56	8.13	0.00
37	ER7a	ExonRegion	0	34.43	15.84	24.87	22.41	120.20	68.49	53.87
38	E7a_E8a	KnownJunction	0	40.22	16.29	27.16	22.16	132.97	47.46	41.23
39	E7a_E8b	NovelJunction	0	0.00	0.00	0.00	1.30	0.00	12.01	0.00
40	ER8a	ExonRegion	0	40.34	11.12	27.86	27.50	93.84	47.38	42.25
41	E8_Da	KnownBoundary	0	0.00	0.00	0.00	1.22	1.18	5.04	0.00
42	E8a_E8b	KnownJunction	0	29.71	19.68	15.81	24.46	72.94	52.66	28.15
43	ER8b	ExonRegion	0	0.33	1.85	0.22	0.81	0.94	2.17	0.21
44	E8_Ab	KnownBoundary	0	0.00	0.00	0.79	1.08	0.99	3.32	0.00
45	ER8c	ExonRegion	0	34.87	17.97	21.26	26.11	102.78	51.97	33.07
46	E8_Db	KnownBoundary	0	13.60	4.54	13.39	2.19	49.63	18.95	10.29
47	E8_Dc	KnownBoundary	0	13.64	1.21	7.63	1.27	20.63	12.14	3.38
48	ER8d	ExonRegion	1	25.49	4.86	19.87	3.74	63.30	25.75	12.82
49	ER8e	ExonRegion	0	8.55	2.86	4.39	3.72	26.82	11.00	4.82
50	E8d_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E9_Aa	NovelBoundary	0	446.34	265.47	291.44	272.81	58.85	267.89	211.68
52	ER9a	ExonRegion	0	1.24	1.56	0.33	1.88	1.56	6.36	0.51