Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF493	Gene	0	28.20	13.16	30.65	8.52	71.85	31.39	12.60
2	355504	Transcript	0	1.03	0.00	0.00	1.68	4.31	1.58	0.00
3	392288	Transcript	0	0	0	0	0	0	0	0
4	392287	Transcript	0	0	0	0	0	0	0	0
5	339914	Transcript	0	3.99	4.08	6.57	0.90	18.44	4.07	2.69
6	IG21_AR1	ActiveIntergenicRegion	0	1.90	2.44	1.81	0.00	19.45	3.50	4.89
7	IG21_SR6	SilentIntergenicRegion	0	5.69	4.34	3.02	0.66	41.24	4.98	4.10
8	IG21_AR6	ActiveIntergenicRegion	0	5.67	2.45	4.22	0.44	43.68	7.95	6.41
9	ER1a	ExonRegion	0	0.00	0.00	0.95	0.00	2.43	0.00	0.67
10	ER1b	ExonRegion	0	14.11	8.71	16.29	6.74	46.94	11.04	9.37
11	E1a_E2a	KnownJunction	0	2.50	3.28	1.37	0.00	2.14	4.18	1.43
12	E1a_E5a	KnownJunction	0	1.03	0.00	0.00	1.68	4.31	1.58	0.00
13	I1	Intron	0	10.82	2.98	7.93	2.28	6.59	3.28	4.46
14	I1_AR5	ActiveIntronRegion	0	16.05	4.85	12.67	4.15	10.30	4.49	7.58
15	I1_SR3	SilentIntronRegion	0	16.04	2.61	8.05	1.37	10.22	3.17	4.99
16	I1_AR6	ActiveIntronRegion	0	12.52	1.02	12.09	1.24	6.42	2.69	4.29
17	I1_AR11	ActiveIntronRegion	0	11.51	3.17	10.71	0.00	7.47	2.28	2.93
18	I1_AR12	ActiveIntronRegion	0	15.13	4.47	8.31	1.68	8.93	2.04	5.26
19	ER2a	ExonRegion	0	17.67	10.68	17.93	3.09	32.23	12.21	15.74
20	E2_Da	NovelBoundary	0	8.78	1.63	14.96	6.07	10.03	4.74	2.67
21	E2a_E3a	KnownJunction	0	6.16	7.22	10.17	1.44	28.52	6.49	3.14
22	E2a_E3b	KnownJunction	0	12.57	6.41	13.48	3.98	79.76	10.72	7.93
23	I2	Intron	0	11.15	0.74	15.14	1.89	6.24	3.15	3.57
24	I2_AR1	ActiveIntronRegion	0	11.19	0.74	15.19	1.90	6.26	3.17	3.58
25	ER3a	ExonRegion	0	9.80	9.11	16.09	2.18	42.31	9.81	6.24
26	ER3b	ExonRegion	0	18.02	10.04	17.74	3.86	73.69	11.95	9.39
27	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.89
28	E3a_E5a	KnownJunction	0	11.22	6.78	10.62	1.14	16.18	9.92	5.89
29	I3	Intron	0	6.21	1.20	4.51	0.00	18.20	1.62	1.44
30	I3_SR1	SilentIntronRegion	0	6.97	1.35	5.06	0.00	20.04	1.82	1.62
31	E4_Aa	NovelBoundary	1	133.09	98.78	78.94	37.52	93.11	36.61	38.72
32	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	1.74	0.00	0.48
33	E4_Da	NovelBoundary	0	213.81	224.12	162.36	201.72	122.94	152.54	133.54
34	ER5a	ExonRegion	0	29.51	13.60	32.12	8.94	74.60	33.36	12.84
35	IG22_SR2	SilentIntergenicRegion	0	11.01	0.78	6.09	0.22	129.70	0.13	1.25
36	IG22_AR3	ActiveIntergenicRegion	0	16.58	0.37	11.15	0.46	128.10	0.00	1.44
37	IG22_SR3	SilentIntergenicRegion	0	10.35	1.18	5.55	0.42	116.32	1.26	1.35
38	IG22_AR4	ActiveIntergenicRegion	0	11.56	1.20	7.33	0.87	90.45	1.64	0.63
39	IG22_SR4	SilentIntergenicRegion	0	23.69	0.00	10.95	0.39	130.13	0.00	0.45
40	IG22_AR5	ActiveIntergenicRegion	0	21.11	0.97	11.27	0.50	116.25	1.94	0.25
41	IG22_SR5	SilentIntergenicRegion	0	13.16	0.30	6.16	0.32	92.95	0.31	0.69
42	IG22_AR6	ActiveIntergenicRegion	0	32.91	4.29	15.30	1.67	198.94	2.36	2.06
43	IG22_SR6	SilentIntergenicRegion	0	4.85	0.28	3.95	0.19	15.43	0.03	0.42
44	IG22_AR7	ActiveIntergenicRegion	0	7.48	0.23	2.64	0.00	58.56	2.59	1.04
45	IG22_SR7	SilentIntergenicRegion	0	12.75	0.86	6.78	0.40	41.51	0.95	0.87
46	IG22_AR9	ActiveIntergenicRegion	0	2.82	0.00	2.71	0.00	31.89	1.23	0.67