Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PTPRS	Gene	0	4.88	4.37	29.85	34.85	278.27	37.67	35.31
2	348075	Transcript	0	0	0	0	0	0	0	0
3	355005	Transcript	0	0	0	0	0	0	0	0
4	353284	Transcript	0	0	0	0	0	0	0	0
5	355322	Transcript	0	0	0	0	0	0	0	0
6	357368	Transcript	0	0.00	0.00	0.00	0.00	0.40	1.06	0.00
7	356037	Transcript	0	0	0	0	0	0	0	0
8	262963	Transcript	0	0	0	0	0	0	0	0
9	394648	Transcript	0	0.15	0.15	0.24	0.45	3.37	0.24	1.05
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	7.79	0.00	0.37
11	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	7.54	0.00	3.25
12	ER2a	ExonRegion	0	0.00	0.46	0.21	0.63	2.76	0.00	0.01
13	E2_Ab	KnownBoundary	0	0.00	1.26	0.00	0.00	4.43	0.00	0.00
14	ER2b	ExonRegion	0	1.20	3.33	9.20	19.14	55.55	19.60	13.71
15	E2a_E3a	KnownJunction	0	0.77	5.28	19.90	28.31	114.73	54.16	22.17
16	ER3a	ExonRegion	0	2.27	8.58	24.75	45.96	166.33	53.56	32.39
17	E3a_E4a	KnownJunction	0	3.77	10.14	33.27	52.20	220.25	79.25	52.64
18	ER4a	ExonRegion	0	4.13	10.88	36.62	53.07	267.20	56.65	47.27
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	1.75
20	E4a_E6a	KnownJunction	0	5.37	8.88	42.21	57.38	351.79	46.69	59.35
21	ER5a	ExonRegion	0	0.44	0.00	0.53	0.72	6.17	0.71	1.39
22	ER6a	ExonRegion	0	4.81	10.61	41.10	55.42	326.67	46.46	56.34
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E6a_E7b	KnownJunction	0	7.44	12.30	40.50	46.16	345.63	31.65	47.62
25	ER7a	ExonRegion	0	0.25	0.52	1.60	1.69	11.57	2.58	1.83
26	ER7b	ExonRegion	0	4.58	9.00	41.24	50.86	308.40	51.17	49.34
27	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E7a_E10b	KnownJunction	0	3.44	3.31	36.56	48.63	281.50	28.17	32.60
30	E8a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
31	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	1.21	1.53	0.00
32	I8_AR2	ActiveIntronRegion	0	1.95	0.11	4.91	3.10	14.47	8.01	2.60
33	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER9a	ExonRegion	0	0.09	0.00	0.08	0.14	0.63	0.00	0.00
35	ER10a	ExonRegion	0	0.58	0.91	7.96	12.16	68.03	9.19	7.76
36	ER10b	ExonRegion	0	6.12	3.78	36.14	51.73	274.73	44.28	43.81
37	E10a_E11a	KnownJunction	0	5.51	3.26	34.68	58.14	162.13	63.46	48.76
38	ER11a	ExonRegion	0	3.92	5.42	23.06	31.72	139.07	30.96	27.16
39	E11a_E12a	KnownJunction	0	0.80	1.10	21.30	32.16	164.37	26.21	29.45
40	ER12a	ExonRegion	0	3.07	6.44	26.73	32.80	208.16	36.21	30.60
41	E12a_E13a	KnownJunction	0	1.87	2.99	31.63	49.03	188.55	50.97	34.75
42	ER13a	ExonRegion	0	1.89	4.38	25.89	35.44	185.07	34.50	24.33
43	E13a_E14a	KnownJunction	0	2.59	5.20	22.50	24.76	253.86	36.37	14.33
44	E13a_E19a	KnownJunction	0	0.00	0.00	0.85	1.68	20.70	2.71	6.72
45	ER14a	ExonRegion	0	1.00	4.20	11.77	27.02	112.90	25.92	13.33
46	E14a_E15a	KnownJunction	0	0.00	0.00	7.89	20.97	92.76	18.73	15.68
47	ER15a	ExonRegion	0	1.38	4.63	9.85	25.59	102.15	18.97	17.25
48	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E15a_E17a	KnownJunction	0	0.80	6.54	19.82	30.15	168.45	28.22	25.64
50	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	2.10	0.00	0.89
51	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.63	0.54	0.67
52	ER17a	ExonRegion	0	2.35	3.74	24.01	32.24	155.74	27.98	30.03
53	E17a_E18a	KnownJunction	0	4.62	2.42	14.82	36.76	177.11	23.74	29.72
54	ER18a	ExonRegion	0	1.71	3.63	18.95	27.38	144.87	24.67	21.96
55	E18a_E19a	KnownJunction	0	4.46	2.68	20.26	46.14	130.82	51.94	31.74
56	ER19a	ExonRegion	0	7.90	7.88	50.59	56.75	429.44	76.81	68.37
57	E19a_E20a	KnownJunction	0	6.81	7.51	52.85	46.41	246.53	63.06	62.97
58	ER20a	ExonRegion	0	6.44	8.08	52.11	55.36	427.73	61.09	61.36
59	E20a_E21a	KnownJunction	0	5.74	4.20	62.93	51.93	338.46	49.66	58.49
60	ER21a	ExonRegion	0	5.97	4.95	54.18	57.55	422.81	53.87	57.51
61	E21a_E22a	KnownJunction	0	8.26	5.33	52.49	45.95	341.21	48.53	49.21
62	ER22a	ExonRegion	0	4.79	4.38	37.46	51.40	315.22	46.58	37.41
63	E22a_E23a	KnownJunction	0	8.38	4.62	55.05	86.77	382.54	70.59	49.84
64	ER23a	ExonRegion	0	5.82	5.46	49.63	66.59	309.69	52.24	41.69
65	E23a_E24a	KnownJunction	1	2.92	1.21	38.02	39.26	180.02	28.09	20.26
66	E23a_E25a	NovelJunction	1	4.57	3.07	2.49	16.93	189.08	28.78	21.55
67	E24a_E25a	KnownJunction	0	4.27	3.76	30.41	24.95	214.62	29.13	26.61
68	ER24a	ExonRegion	0	6.66	4.66	50.18	54.14	294.11	45.26	36.32
69	ER25a	ExonRegion	0	5.58	3.85	58.66	49.02	588.19	54.11	61.97
70	E25a_E26a	KnownJunction	1	1.77	1.63	14.07	8.32	149.54	17.88	2.51
71	E25a_E27a	KnownJunction	0	3.27	3.91	36.50	25.52	407.90	27.26	63.86
72	ER26a	ExonRegion	1	0.53	0.78	16.23	10.26	145.18	21.68	3.82
73	E26a_E27a	KnownJunction	1	0.00	0.00	13.35	11.59	153.72	21.23	5.45
74	ER27a	ExonRegion	0	8.70	3.04	45.00	52.11	571.18	54.21	59.98
75	E27a_E28a	KnownJunction	0	11.78	0.00	49.58	69.03	596.26	79.73	70.81
76	ER28a	ExonRegion	0	10.88	5.60	55.46	72.40	653.89	65.80	84.67
77	E28a_E29a	KnownJunction	0	13.72	3.10	56.22	87.53	617.61	85.63	77.92
78	ER29a	ExonRegion	0	13.53	5.17	51.30	66.62	677.27	54.70	70.28
79	E29a_E30a	KnownJunction	0	13.87	4.28	81.55	71.22	856.67	70.40	103.96
80	ER30a	ExonRegion	0	11.74	5.86	64.27	55.37	615.06	59.20	78.32
81	E30a_E31a	KnownJunction	0	11.57	3.26	56.50	43.05	487.54	39.26	67.43
82	ER31a	ExonRegion	0	11.23	5.74	65.44	38.98	705.07	56.66	76.13
83	E31a_E32a	KnownJunction	0	10.90	2.73	45.08	37.52	528.92	41.38	47.39
84	E32_Aa	NovelBoundary	1	3.71	0.00	18.67	0.00	2.10	0.00	0.00
85	ER32a	ExonRegion	0	10.52	5.70	50.39	47.08	570.18	50.49	65.53
86	E32a_E33a	KnownJunction	0	11.28	3.57	60.94	62.26	703.73	56.25	75.88
87	ER33a	ExonRegion	0	10.15	10.21	53.37	55.61	508.44	60.88	65.91
88	E33a_E34a	KnownJunction	0	9.30	4.28	56.06	48.87	610.51	46.31	53.53
89	ER34a	ExonRegion	0	7.62	5.22	52.00	40.75	512.88	48.60	50.45
90	E34a_E35a	KnownJunction	0	4.91	4.33	43.82	24.35	465.21	52.98	51.64
91	ER35a	ExonRegion	0	7.23	1.15	44.64	37.46	460.04	42.83	48.89
92	E35a_E36a	KnownJunction	0	8.66	0.97	42.85	32.35	404.05	45.43	49.56
93	I35_AR2	ActiveIntronRegion	0	3.66	1.47	5.37	4.82	15.50	12.51	7.28
94	I35_AR3	ActiveIntronRegion	0	2.73	1.03	4.68	3.76	12.33	10.06	5.47
95	ER36a	ExonRegion	0	5.43	2.12	44.47	35.94	470.35	48.50	49.62
96	E36a_E37a	KnownJunction	0	4.34	1.63	47.35	43.81	390.95	46.74	55.76
97	ER37a	ExonRegion	0	7.67	3.61	39.11	37.71	513.98	56.40	55.68
98	E37a_E38a	KnownJunction	0	5.61	9.27	44.12	38.60	462.85	55.07	52.73
99	ER38a	ExonRegion	0	5.08	2.07	18.63	18.96	207.98	32.79	19.59