Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATP9B	Gene	0	24.93	12.55	35.26	29.10	42.18	29.87	31.58
2	359184	Transcript	0	3.76	3.37	5.97	5.73	5.09	7.31	9.88
3	307671	Transcript	0	9.27	2.78	10.84	6.13	20.01	7.40	9.86
4	397810	Transcript	0	3.38	0.76	5.55	3.76	3.81	3.78	1.11
5	IG14_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	47.93	0.00	0.00
6	IG14_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	96.57	0.50	0.00
7	IG14_SR1	SilentIntergenicRegion	0	0.00	0.00	0.42	0.00	96.40	0.90	0.00
8	IG14_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.14	0.00	87.14	0.25	0.00
9	IG14_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	49.50	0.00	0.00
10	IG14_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	70.05	0.00	0.00
11	IG14_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	76.40	0.15	0.00
12	IG14_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	80.90	0.00	0.00
13	ER1a	ExonRegion	0	0.69	0.97	0.81	1.25	3.40	1.10	0.88
14	ER1b	ExonRegion	1	0.42	14.44	5.44	10.35	18.78	22.61	7.17
15	E1a_E2a	KnownJunction	0	0.90	13.45	9.18	10.08	9.47	15.52	4.34
16	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	0.00	0.00
17	ER2a	ExonRegion	0	24.83	27.57	35.91	35.42	36.11	53.10	20.03
18	E2a_E3a	KnownJunction	1	34.05	23.78	58.04	31.07	52.61	47.57	18.32
19	ER3a	ExonRegion	1	60.99	26.54	92.67	58.78	67.46	84.57	27.60
20	E3_Da	NovelBoundary	0	3.07	10.82	8.08	8.99	2.19	0.99	3.63
21	E3a_E4a	KnownJunction	1	87.96	29.79	134.79	78.46	106.41	103.85	33.01
22	ER4a	ExonRegion	1	77.48	20.59	112.40	56.46	89.45	88.73	34.84
23	E4a_E5a	KnownJunction	1	52.11	14.27	56.83	40.34	38.06	31.81	29.87
24	ER5a	ExonRegion	0	48.21	16.51	66.70	40.05	45.02	37.84	32.23
25	E5a_E6a	KnownJunction	0	29.36	15.68	62.50	33.86	45.94	47.94	38.12
26	ER6a	ExonRegion	0	38.88	18.57	62.70	29.31	45.34	39.17	39.70
27	E6a_E7a	KnownJunction	0	35.63	18.13	43.69	19.10	40.41	25.59	30.93
28	ER7a	ExonRegion	0	41.75	13.50	54.02	25.97	37.55	24.07	27.24
29	E7a_E8a	KnownJunction	1	24.93	4.23	44.29	16.25	34.46	22.14	18.39
30	E7a_E9a	KnownJunction	0	7.14	0.00	9.99	6.99	6.45	0.00	2.24
31	ER8a	ExonRegion	0	24.05	11.16	46.04	17.47	40.48	26.17	25.36
32	E8a_E9a	KnownJunction	0	25.25	7.72	36.60	7.88	39.12	20.77	21.25
33	ER9a	ExonRegion	0	34.97	11.55	60.59	34.96	45.03	31.04	29.63
34	E9a_E10a	KnownJunction	0	29.71	16.66	68.29	36.63	57.19	29.08	34.22
35	ER10a	ExonRegion	0	30.99	12.23	54.21	30.60	56.60	30.80	27.52
36	E10a_E11a	KnownJunction	0	20.45	7.20	36.82	23.24	48.02	26.34	29.77
37	E10a_E12a	KnownJunction	1	9.40	0.00	13.12	6.69	10.03	11.68	2.22
38	ER11a	ExonRegion	0	27.18	12.53	40.73	22.54	43.68	26.89	40.97
39	E11a_E12a	KnownJunction	0	41.61	13.79	49.23	26.03	63.35	27.44	38.51
40	ER12a	ExonRegion	0	45.90	11.70	62.76	36.91	63.90	38.85	40.80
41	E12a_E13a	KnownJunction	0	45.61	7.38	43.48	26.60	38.01	32.40	32.95
42	ER13a	ExonRegion	0	32.87	13.62	46.86	24.87	51.77	26.11	33.76
43	E13a_E14a	KnownJunction	1	26.89	13.35	49.87	21.51	46.61	17.71	16.58
44	ER14a	ExonRegion	0	19.63	10.64	39.61	25.25	39.54	23.00	31.94
45	E14a_E15a	KnownJunction	0	20.78	16.55	38.02	33.65	40.39	29.80	33.01
46	ER15a	ExonRegion	0	28.30	17.57	43.00	32.41	39.42	33.56	29.24
47	E15a_E16a	KnownJunction	0	23.18	10.30	34.68	24.25	36.42	27.23	23.42
48	ER16a	ExonRegion	0	26.03	11.63	30.35	23.45	34.73	29.70	28.34
49	E16_Da	KnownBoundary	0	19.41	14.69	24.46	27.44	38.61	31.49	31.39
50	E16a_E22b	KnownJunction	0	1.82	0.00	5.27	0.00	0.00	0.00	0.00
51	ER16b	ExonRegion	0	21.15	13.57	26.04	27.74	34.89	32.03	33.74
52	E16b_E17a	KnownJunction	0	24.25	17.08	32.48	30.48	42.05	30.04	32.86
53	ER17a	ExonRegion	0	13.96	16.19	23.20	27.27	35.21	25.26	34.00
54	E17a_E18a	KnownJunction	0	9.16	8.59	16.15	32.94	27.99	25.30	24.06
55	ER18a	ExonRegion	0	10.37	8.04	17.01	20.98	29.26	14.14	19.93
56	E18a_E19a	KnownJunction	0	12.73	16.50	20.03	20.07	26.46	11.58	28.16
57	E19_Aa	NovelBoundary	1	2.34	0.00	3.62	14.71	1.13	4.61	1.53
58	ER19a	ExonRegion	0	20.02	12.25	24.77	31.01	40.05	15.18	34.47
59	E19a_E20a	KnownJunction	1	21.80	11.17	28.15	48.17	76.24	12.25	40.04
60	ER20a	ExonRegion	0	50.69	14.47	63.34	54.87	94.77	41.70	61.53
61	E20_Da	NovelBoundary	1	35.35	1.18	35.21	1.68	0.00	0.00	0.00
62	E20a_E21a	KnownJunction	0	59.02	15.95	70.82	43.86	45.97	30.26	58.95
63	ER21a	ExonRegion	0	31.39	15.77	45.41	43.33	42.90	40.91	49.95
64	E21a_E22a	KnownJunction	0	19.09	11.72	24.88	36.79	34.63	42.24	38.37
65	ER22a	ExonRegion	0	16.23	11.55	25.91	26.40	46.02	35.79	34.37
66	E22_Ab	NovelBoundary	1	19.03	10.67	32.85	33.86	51.75	32.91	39.97
67	E22a_E23a	KnownJunction	0	18.28	8.17	21.41	39.47	47.93	33.45	41.66
68	ER22b	ExonRegion	0	18.14	11.22	29.10	34.42	46.08	34.90	41.71
69	ER23a	ExonRegion	0	21.13	10.93	21.05	30.00	43.79	26.33	40.96
70	E23a_E24a	KnownJunction	0	25.12	11.64	22.20	22.13	33.98	19.27	33.65
71	ER24a	ExonRegion	0	18.22	10.33	22.09	28.65	44.44	23.51	37.86
72	E24a_E25a	KnownJunction	1	16.67	9.12	23.75	31.48	44.54	23.91	48.05
73	E24a_E26a	KnownJunction	0	0.75	3.70	3.97	8.86	3.18	10.93	0.89
74	ER25a	ExonRegion	0	19.92	8.15	26.05	28.43	44.73	23.44	40.27
75	E25a_E26a	KnownJunction	1	21.21	4.23	23.94	23.84	43.82	24.98	37.79
76	ER26a	ExonRegion	1	20.96	7.43	35.76	43.91	56.54	35.14	51.23
77	E26a_E27a	KnownJunction	0	0.00	1.37	0.00	0.00	0.00	0.00	0.00
78	E26a_E28a	KnownJunction	1	18.48	5.67	29.44	36.33	46.59	22.91	46.20
79	I26_AR1	ActiveIntronRegion	0	15.77	6.02	13.84	5.39	15.27	5.67	5.16
80	ER27a	ExonRegion	0	1.95	3.81	1.22	1.93	4.18	0.73	3.21
81	E27_Da	NovelBoundary	0	2.50	4.54	5.81	2.25	5.00	9.14	5.40
82	E27a_E28a	KnownJunction	0	0.82	0.00	0.00	1.68	0.00	0.00	0.00
83	ER28a	ExonRegion	0	19.56	8.48	34.98	38.31	49.86	24.58	38.73
84	E28a_E29a	KnownJunction	0	17.89	10.04	30.71	36.46	37.69	23.66	37.43
85	ER29a	ExonRegion	1	19.49	10.11	35.72	33.73	48.91	34.32	56.59
86	E29_Da	KnownBoundary	0	0.67	2.18	0.66	0.00	1.08	0.00	0.89
87	E29a_E30a	KnownJunction	0	8.14	1.47	11.48	2.09	18.10	3.03	6.59
88	E29a_E31a	KnownJunction	1	12.28	8.30	22.66	19.32	16.16	28.49	36.30
89	ER29b	ExonRegion	0	1.14	0.84	0.97	0.00	2.31	0.06	1.34
90	ER30a	ExonRegion	0	7.89	1.21	9.75	0.83	16.25	5.94	6.23
91	E30a_E31a	KnownJunction	0	5.14	0.00	6.21	0.00	13.88	4.61	3.63
92	ER31a	ExonRegion	0	21.12	13.72	23.51	30.78	45.41	31.10	47.41
93	E31_Da	KnownBoundary	1	20.50	20.75	24.36	35.65	61.80	21.71	44.41
94	ER31b	ExonRegion	0	15.90	8.44	15.93	21.59	31.84	16.03	22.99